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Report for Sequence Feature Glyma.04g018100

Feature Type:gene_model
Chromosome:Gm04
Start:1408116
stop:1420864
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g018100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G42440.1AT JGI N/AIEA
GO:0000462GO-bp maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0000479GO-bp endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0030688GO-cc preribosome, small subunit precursor EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0034511GO-mf U3 snoRNA binding EnsemblGenomesN/AIEA
KOG1980 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR12858Panther RIBOSOME BIOGENESIS PROTEIN JGI N/AIEA
PTHR12858:SF1Panther PRE-RRNA-PROCESSING PROTEIN TSR1 HOMOLOG JGI N/AIEA
PF04950PFAM Protein of unknown function (DUF663) JGI N/AIEA
PF08142PFAM AARP2CN (NUC121) domain JGI N/AIEA

Expression Patterns of Glyma.04g018100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g018100 not represented in the dataset
Glyma.04g018100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g018100
ParalogEvidenceComments
Glyma.06g018400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g018100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01990 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g018100
>Glyma.04g018100.1 sequence-type=CDS polypeptide=Glyma.04g018100.1.p locus=Glyma.04g018100 ID=Glyma.04g018100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGGTCGCGAGTTCAAGTCAACAAACCTCACAAGTCCCGTTTTTCATCCAAATCTTCTCGCAACCTTCATAAAACCTCTGTCAAGGACAGACTCGCAATCGCAAAATCAGAGCGCAATGTCGGCAAAGGAGCTCGTGCAGCTCGAATTCAGAGAAATAAAATGATACGTGATCAGAAAAGAGCTGCTGTTTTGAAAGAAAAAAGAGAACTCAGTGGGTCGAGAAGTCCTCCCCGAGTGATAGTTCTCTTCGCCCTCTGTGCTTCTGTGGATTTAGAATCACTTGCTGATGATCTCTTGTCGTTATTATCTAAAGATACTTGTGTGGTGCTGTCAGGAACCGTTGCTTCTTCTGAATATAGGACAAGAATAACGGTACTAAAAGCACCCCATGGCGATCTACTATCATGCATGGAAATGGCCAAGGTTGCTGATCTAATGGTTTTTGTGGCCTCGGCAAGGTCTTCATGTGAAGAAACTGATTCCTACTACATTGACTCATTTGGAAATCAATGCCTTTCTGTATTTAGATCTCTTGGTTTACCAAGCACTGCTGTGTTTATTCGTGATCTATCTACTGATCTTAAACAAAGAAATGAACTAAAGAAGATGTGCACATCTAGTCTTGCCTCGGAATTTCCTGAGGATTGTAAATTTTATCCAGCTGATACAAAGGATGAGCTACACAAGTTCTTGTGGCTCTTTAAAGAGCAAAGGCTTAAAGTTCCTCATTGGAGAACTCAACGATCATACCTCTTGTCTCAAAAGGTTGATGCAGAATATGATGGCAACTCTGAAAAATGCACCCTGTTTCTCACTGGTTACCTTCGTTCTCGTAACCTCTCAGTCAATCAACTGGTTCATGTTTCAGGTGCAGGAGATTTCCAATTGTCTAAAATTGAAGTTCTTAAAGATCCTTGTCCTTTGAATTCAAGGAAAAATCAGGACCTAATGGATGCTGATGAAATGCATGATGCAGAGGTCATTGGTTCTCTAGCTCCTGATCCTCAAAACCAGGAAGCCTTAGTGGTTGAGAATATACCTGATCCTCTTGCTGGAGAGCAGACATGGCCAACAGAGGCTGAAATTGCTAAGGCTGATGAAGATAAAAAGAAAAAGAAGATAAAAAAGAGGAGTCTTCCTCATGGCACTTCAGAATATCAGGCTGCTTGGATTGTGGACGATTCTGATGAGGAGGAGTCGGATTGTGACAATGAAAACGATGATGGTATGGTGTTGGATGAAGGGGAGGATGGATTTCCTGGTCAAGAAAACAGGTATTCAGACTTTGATGGTGATGGGGCTTCTCTTAGATTGGGAGATTCTGATGAAGAAACTGACATTGATTCAGTGATGATGGAAGTAGATAATTTGACGAGAGAAAAGATAGAAGATGAACTCAAGGAACTTAAAGAAGCACATGCTGCAGATGAGGAGTTTCCTGATGAAGTGGATACACCATTGGATGTTCCTGCTAGGAAGCGGTTTGCAAAATACAGGGGACTCAAGTCCTTTAGGACTTCTTCATGGGATCCTAAAGAATCTCTACCCCAAGATTATGCCAGAATTTTTGAATTTGATAATTTTAAAAGAACACAAAAACACGTTCTTGCTAAAGCTTTAGAACTGGATCAAGAAAACCGGGAGGACTGTATTCCAGTTGGCTCGTATGCTAGGTTGCATATCATGGGAGTGCCCAGTGCTGTTGCTTCAAAGTTATCTTTGCTTGCAAAGACAATCCCGGTTACAGCATGTGGGCTGTTGAAACATGAGTCCAAAGTATCTGTCCTTCATTTCAGTGTGAAGAAGCATGAAACATATGATGCACCCATCAAATCCAAGGAAGAGTTAATTTTCCATGTTGGGTTTCGGCAATTTGTTGGCAGGCCAATTTTCTCTAGCGAGTTCATAAATACAGACAAGAACAAGATGGAGAGGTTTCTCCATGCTGGGCGTTTTTCAGTTGCTTCAATCTATGCTCCAATTTCTTTTCCTCCTCTTCCTACGATAATCCTAAAAAGAGCTGGAGAGGATGCTGCACCTGCAGTGGCTGCTGTTGGCTCACTGAAAACTGTTGATGCAGATAGGATAATCCTTAAGCGTGTTATTTTGACAGGTTATCCCCAGAGAGTATCAAAACGTAAAGCTTCTGTGAGACACATGTTTTATAATCCGGAGGATGTTAAATGGTTTAAGCCTGTCGAGCTTTATACCAAACGTGGTCTTCGTGGTCGAATAAAAGAACCTGTTGGTACACATGGTACAATGAAGTGCCTTCTTAACGGGGTTCTTGAACAGCGTGATACTGTATGTATGAATTTATTCAAACGTGCATACCCGAAGTGGCCAACCCATCATTTTCCTCTATCTGAATAA
Predicted protein sequences of Glyma.04g018100
>Glyma.04g018100.1.p sequence-type=predicted peptide transcript=Glyma.04g018100.1 locus=Glyma.04g018100 ID=Glyma.04g018100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGSRVQVNKPHKSRFSSKSSRNLHKTSVKDRLAIAKSERNVGKGARAARIQRNKMIRDQKRAAVLKEKRELSGSRSPPRVIVLFALCASVDLESLADDLLSLLSKDTCVVLSGTVASSEYRTRITVLKAPHGDLLSCMEMAKVADLMVFVASARSSCEETDSYYIDSFGNQCLSVFRSLGLPSTAVFIRDLSTDLKQRNELKKMCTSSLASEFPEDCKFYPADTKDELHKFLWLFKEQRLKVPHWRTQRSYLLSQKVDAEYDGNSEKCTLFLTGYLRSRNLSVNQLVHVSGAGDFQLSKIEVLKDPCPLNSRKNQDLMDADEMHDAEVIGSLAPDPQNQEALVVENIPDPLAGEQTWPTEAEIAKADEDKKKKKIKKRSLPHGTSEYQAAWIVDDSDEEESDCDNENDDGMVLDEGEDGFPGQENRYSDFDGDGASLRLGDSDEETDIDSVMMEVDNLTREKIEDELKELKEAHAADEEFPDEVDTPLDVPARKRFAKYRGLKSFRTSSWDPKESLPQDYARIFEFDNFKRTQKHVLAKALELDQENREDCIPVGSYARLHIMGVPSAVASKLSLLAKTIPVTACGLLKHESKVSVLHFSVKKHETYDAPIKSKEELIFHVGFRQFVGRPIFSSEFINTDKNKMERFLHAGRFSVASIYAPISFPPLPTIILKRAGEDAAPAVAAVGSLKTVDADRIILKRVILTGYPQRVSKRKASVRHMFYNPEDVKWFKPVELYTKRGLRGRIKEPVGTHGTMKCLLNGVLEQRDTVCMNLFKRAYPKWPTHHFPLSE*






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