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Report for Sequence Feature Glyma.04g017900

Feature Type:gene_model
Chromosome:Gm04
Start:1396851
stop:1402812
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g017900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42320.1AT Zn-dependent exopeptidases superfamily protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0006508GO-bp proteolysis JGI N/AIEA
GO:0005615GO-cc extracellular space EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004181GO-mf metallocarboxypeptidase activity EnsemblGenomesN/AIEA
GO:0004181GO-mf metallocarboxypeptidase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG2650 KOG Zinc carboxypeptidase JGI N/AIEA
PTHR11705Panther PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B JGI N/AIEA
PTHR11705:SF3Panther JGI N/AIEA
PF00246PFAM Zinc carboxypeptidase JGI N/AIEA

Expression Patterns of Glyma.04g017900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g017900 not represented in the dataset
Glyma.04g017900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g017900
ParalogEvidenceComments
Glyma.06g018200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g017900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01971 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g017900
>Glyma.04g017900.2 sequence-type=transcript locus=Glyma.04g017900 ID=Glyma.04g017900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGACGGTTTCTTGATTGGTAGCTTTCCTGTTTGTTTGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGTTGGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGTTGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGCAAGTGTAGACCAATTGTTTCTGCTATACCCCTCTAAAACTATGTCGTAGGTTAAATTGTATATCCATTTTTGGGGGGAAAAATTGTAAGTTAAATTGTTGTCTGTATTACTATGTAACGCGAGCCTTTTTTTTCTGAGGCTATATAATCTAATTCTTTATAGTGCCCAACTCAAGGACTGGTGGGTTGGGTTGTAAACGAATGTATAAAGGTTGTTTGTTATACCCGAACGTCAATCCTTCTCTTTTACATTAGA

>Glyma.04g017900.3 sequence-type=transcript locus=Glyma.04g017900 ID=Glyma.04g017900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAAAAAATCTTAAAACACTACTGCATTTTTACTTATTCAAACAATTCAATCCAAACACCACCTTATTTTGTCATTGGTGGAAGACAGTGGTCAGACACACTTTGATAAGCTAAATCAATAATAACGATatcaacatcaaatcaaacatttacataacatTATATTACCATAAAAAATGAAATGAAATTTAATCTGTTCATACTCTGTTCTGGATCTTGCCATGGCTCTTTCGATTTTTCAATTTCTTCTGTTCTCAATCAGCAATTTCTTCCTCGCTTCTTCTTTCCAAGATCTTCTTCTTCTCTCTGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTTCGATCTCTACCATTCCAGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATGTATGTTGCTTTGACTCAGCAAGGATCGCTCCATTCCATCCGAGTGTTTCCTATTCCTTTACTCTCAAGAGTTTTTTTTTTTAAATAAATGTTTTTAACTTACAATTAAGGTGAGGGGGAGTGAATGACCCTTGGCGCGCGACAATATAAAGTTATTACTAGGGGTGTGCAAAAATTAGTTCGGTAAAAAAATCGAACCGAATTGATTTCAAATTGTTTTAACCGGTTCGATTTTATATCCAAATAGTCAAACTGATTTAGAAACTAGTTCAAAATCGAACtggttttaaaaaactgattttgaattgaactagttcaaaatcgaactgtttaatcagttttaactggtactaagagttgaaccaattttgaattggttttcaaactagtttttgaattatttttttcaaatgaaaaaaatatttaaataaaaaccaattcgactaaccaaactggttttgtagaaacaatttgattAATCGAATTGATTTTATAAAATAGTAAA
Coding sequences of Glyma.04g017900
>Glyma.04g017900.1 sequence-type=CDS polypeptide=Glyma.04g017900.1.p locus=Glyma.04g017900 ID=Glyma.04g017900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTTCGATTTTTCAATTTCTTCTGTTCTCAATCAGCAATTTCTTCCTCGCTTCTTCTTTCCAAGATCTTCTTCTTCTCTCTGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTTCGATCTCTACCATTCCAGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGTTGGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGTTGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGCAAGTGTAGACCAATTGTTTCTGCTATACCCCTCTAA

>Glyma.04g017900.2 sequence-type=CDS polypeptide=Glyma.04g017900.2.p locus=Glyma.04g017900 ID=Glyma.04g017900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATAGAGTTCTGAGTGACTGGTCGGCAACATTCTTTACGATTTTCAAATTGGTGCCGCAGAAACTTGGTGATTCAAACGCGTCTATTTTGAAGCCGGATAAGTTGGTATCGATAGATGAGTATCTAGATGGGTATTTGATGGAAAGAAGAAATAGATATGGAAAGAAGTTGGAGGTGCTTGAGCTTGGAATGCAAGAAATAAGAACATATTTTAGGCTCTTTTTATTATCTTCAGTGTTATTACTGTTCATGTTCTGTTCTAGAATTTCAAAAAGCAAGTGTAGACCAATTGTTTCTGCTATACCCCTCTAA

>Glyma.04g017900.3 sequence-type=CDS polypeptide=Glyma.04g017900.3.p locus=Glyma.04g017900 ID=Glyma.04g017900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTTTCGATTTTTCAATTTCTTCTGTTCTCAATCAGCAATTTCTTCCTCGCTTCTTCTTTCCAAGATCTTCTTCTTCTCTCTGTTAATGCGCAATCACACAATCTCACTCAACCTTCAGTTACGCCAATCAACTTCGATCTCTACCATTCCAGTGGCAATTTGATGGAGGAGATCAGGGCCTTGGTCCATCGTCACCCAGATAAACTCACTATGGAGACAATTAAAGCTGGAAACAAAGGCTATGGTGCTGAGGTTTCAGTGGTTACTTATTGCAAGGAAAAGAAAGACAATGATGAGAGGTCGAAGCTTCGGATTCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTGATTACCACAGAACTTGCTTTAAGGATTTTGTCTATCTTAAGTGAAGAAAAATTTCTACCCAGCATGGATCAAGCTTCCTTAAACAGTGCACTTGACAAGCTTGTCATTAAGGTGGTTCCAATGGAAAACTTGAATGGCCGCAAAGTTGTTGAAGCTGGAGATCTCTGTGAGAGAAGAAATGGTAGAGGAGTTGATCTCAACCGGAATTGGAGTGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAGAATCCTGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCGAATCTATGGGTCAACGTGCACTCTGGAATGGAGGCTCTTTTTATGCCTTATGATCATAAAAATACAACACCAGATGGATTGCCATTGCAACGGATGAAATCATTGCTTGAAGAAGTAAAACATCTTCATTGCCAAGAGCGCTGCATGATTGGGTCTGGAGGCGGTTCTGTAGGGTATTTTGCACACGGGACAGCAACTGATTTCATGTATGACATTGTGGGGGTACCCATGGCTTTCACCTTTGAGATATATGGTGATGGAACTGCCTCATCGAGAGATTGTTTCAAAATGTTCAATCCCACCGACCTTGCTACCTACAATGTATGTTGCTTTGACTCAGCAAGGATCGCTCCATTCCATCCGAGTGTTTCCTATTCCTTTACTCTCAAGAGTTTTTTTTTTTAA
Predicted protein sequences of Glyma.04g017900
>Glyma.04g017900.1.p sequence-type=predicted peptide transcript=Glyma.04g017900.1 locus=Glyma.04g017900 ID=Glyma.04g017900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSIFQFLLFSISNFFLASSFQDLLLLSVNAQSHNLTQPSVTPINFDLYHSSGNLMEEIRALVHRHPDKLTMETIKAGNKGYGAEVSVVTYCKEKKDNDERSKLRILLSFGQHGRELITTELALRILSILSEEKFLPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPNLWVNVHSGMEALFMPYDHKNTTPDGLPLQRMKSLLEEVKHLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPTDLATYNRVLSDWSATFFTIFKLVPQKLGDSNASILKPDKLVSIDEYLDGYLMERRNRYGKKLEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*

>Glyma.04g017900.2.p sequence-type=predicted peptide transcript=Glyma.04g017900.2 locus=Glyma.04g017900 ID=Glyma.04g017900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEIRALVHRHPDKLTMETIKAGNKGYGAEVSVVTYCKEKKDNDERSKLRILLSFGQHGRELITTELALRILSILSEEKFLPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPNLWVNVHSGMEALFMPYDHKNTTPDGLPLQRMKSLLEEVKHLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPTDLATYNRVLSDWSATFFTIFKLVPQKLGDSNASILKPDKLVSIDEYLDGYLMERRNRYGKKLEVLELGMQEIRTYFRLFLLSSVLLLFMFCSRISKSKCRPIVSAIPL*

>Glyma.04g017900.3.p sequence-type=predicted peptide transcript=Glyma.04g017900.3 locus=Glyma.04g017900 ID=Glyma.04g017900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALSIFQFLLFSISNFFLASSFQDLLLLSVNAQSHNLTQPSVTPINFDLYHSSGNLMEEIRALVHRHPDKLTMETIKAGNKGYGAEVSVVTYCKEKKDNDERSKLRILLSFGQHGRELITTELALRILSILSEEKFLPSMDQASLNSALDKLVIKVVPMENLNGRKVVEAGDLCERRNGRGVDLNRNWSVDWGKKEKDYDPYEENPGIAPFSEPESQIMRKLAISFEPNLWVNVHSGMEALFMPYDHKNTTPDGLPLQRMKSLLEEVKHLHCQERCMIGSGGGSVGYFAHGTATDFMYDIVGVPMAFTFEIYGDGTASSRDCFKMFNPTDLATYNVCCFDSARIAPFHPSVSYSFTLKSFFF*






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