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Report for Sequence Feature Glyma.04g017600

Feature Type:gene_model
Chromosome:Gm04
Start:1373118
stop:1375603
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g017600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G54770.1AT thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) JGI N/AIEA
PWY-6909SoyCyc9 thiazole biosynthesis III (eukaryotes) Plant Metabolic Network ISS
THISYNARA-PWYSoyCyc9 superpathway of thiamine diphosphate biosynthesis III (eukaryotes) Plant Metabolic Network ISS
GN7V-67049SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.04g017600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g017600 not represented in the dataset
Glyma.04g017600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g017600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01935 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g017600
>Glyma.04g017600.2 sequence-type=transcript locus=Glyma.04g017600 ID=Glyma.04g017600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTCATCCACGCGCAGCAGCTAAACCGCGATCTCTCGAACTCTTGAGGGGCGTTTCCACTTCTTGTTTGAGGGGCGTTTCCACTTCTTGTTAGAGGCGGCTTCTTTCTCGTTGGATGAGCTGGTTGATATTTTGAACGTGCCAGTGGCCTTGATGATAGCCGACTCGGCGTGCTCCAAGAGCCACCGGATGGTCTTGCCGTCGAACTTGTGGTCGATCTCTTGGGTCAGCTGGAAGATCCGGGCGACGCAGGCGTTGGTCTACGGCATTGGTCTCTCCGAGGAGAGACATGGCCAAGCTGCAGGTCGGCGTCTCCTTGGTCTGGTGCGAGGGCAACCGTTGTGTGACGACGGACAACTCTTCTCTGCCATGGTGGTTCGCAAGCCGTTGGGCACTGAATTGTTAACAAAGGCAAACTTCAATTGGAAAATAACTTGGGCCTCAAAGCTTGAGAAGTGTTATTGCATCGTTGTTCTACCACAAAATGAGTTGGAAGTGAAAGCAGAAGACACAACATACACTATACCATGCCTTCTGCTCCTTCCAAACTCTACGCAGGTTCTCTGCATTCTCTCAATCCCTTATTCACTATATATGCAGGGTCCGATGTTTTGGGCGATGATGATATCAGAGCAGAAGGTGGCTCATTTGGCATTGAAGCCGTTGGGGAGGAACAATGCAATTGATGGAACGTGTGGAGTTGGAACGAAAGAACCCCAGCTTATTTTCGCTTCTGCAGACAGTGAGGAAATTGTTGATGATTAAACTTACTTTTAAATTAGCAAGATATATAGCTTTTCTTTTCTTTCTGTTTGGTCCCTACTTAATTATGATTTTAATTTATTTGGGCTTAGAACAAGTTTATTAATTGTTTGGGCTTACAAATGTGCCCGTTACAAATACCAAGTGAGCAATCTATTTCCCAAAACTGTTTGAGCTATATTTACAACAATAATTTGCATCATACATGCGTACTCCCATGATAAGGTTATTACTTTAATATCTGAAAATTAAATTTATTATTTTCTAATTATTTACTTTGAAGATTTAGTCATCATGAAGAGTGATTTTGAAAGTTTGTTTCCCTACATGATTGATTGATTGTGTTCGATGTTGCTTTCATAATGAAGTCCAATTCTATCACATTGTTGACTTATCACTTCAAGAACAAGTGAAACTATATGCAGGTGAAAGCATAGCTTCAAGTTGACACATCACATAGAGGAACTGAGGAACATATAATGGGTTTCTCTGTTTTACACCTTATTTCATTGTTGCTTCTTTGGTATTTTTTGCTTGTGCCAGTTATGCTTATAAATTTCAGTGGTTTTTTAAGTTTTGTCTTTTCTTTGTTGCAGTCTTATATTGTATACTTAGGATCACATTCTCATGGCCCAAACCCTTCAGCAAGTGATCTTGAGTCTGCAACGAATTCCCATTACAAATTATTAGGCTCACACTTGGGGAAGGAGTGGAATGCTTCGGGGCCTATGCACGTGGATTTGCTAGAGGGTGCCTTGCAACGCCAAACATCAGTTGAACTCCAAACTAATCTCTGGTCTCCCTGGCTTTCCAAGGATGGAAGTCTTGTACTGAGCGTCCAAAACCACCTTGTGAGTTCAAATTGAATATTGAATTTCATTTTCTTTTACACATTGGACATTTATTTCTCAAGAAAACGAGGGCTCTGTTATCTGTTGGTAGTGTCTGGTATTTTACATGTTTCTTTTTACTTATAATTTCTTGCAGCACTACCTGAAAAGTCATGGGGTTATATCCCAGGGCTATAGCTCTCCCTGGTATTTTACATGTTTCTTTTTACTTATAATTTCTTGTTGATGATGGGCATACAGAGTAAATATTTTATATTATTATTTGATCATCAATTATCAGTATGTTAAGATCGTTATTTTTTTGCATTATTTACTTTTAAAATTACATATGGAGTAATTTGTAATAAGTTGACAGTATTTATTTATTTTTATATTAGGAGG
Coding sequences of Glyma.04g017600
>Glyma.04g017600.1 sequence-type=CDS polypeptide=Glyma.04g017600.1.p locus=Glyma.04g017600 ID=Glyma.04g017600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAGCCGACTCGGCGTGCTCCAAGAGCCACCGGATGGTCTTGCCGTCGAACTTGTGGTCGATCTCTTGGGTCAGCTGGAAGATCCGGGCGACGCAGGCGTTGGTCTACGGCATTGGTCTCTCCGAGGAGAGACATGGCCAAGCTGCAGGTCGGCGTCTCCTTGGTCTGGTGCGAGGGCAACCGTTGTGTGACGACGGACAACTCTTCTCTGCCATGGTGGTTCGCAAGCCGTTGGGCACTGAATTGTTAACAAAGGCAAACTTCAATTGGAAAATAACTTGGGCCTCAAAGCTTGAGAAGTGTTATTGCATCGTTGTTCTACCACAAAATGAGTTGGAAGTGAAAGCAGAAGACACAACATACACTATACCATGCCTTCTGCTCCTTCCAAACTCTACGCAGGTTCTCTGCATTCTCTCAATCCCTTATTCACTATATATGCAGGGTCCGATGTTTTGGGCGATGATGATATCAGAGCAGAAGGTGGCTCATTTGGCATTGAAGCCGTTGGGGAGGAACAATGCAATTGATGGAACGTGTGGAGTTGGAACGAAAGAACCCCAGCTTATTTTCGCTTCTGCAGACATCTTATATTGTATACTTAGGATCACATTCTCATGGCCCAAACCCTTCAGCAAGTGA

>Glyma.04g017600.2 sequence-type=CDS polypeptide=Glyma.04g017600.2.p locus=Glyma.04g017600 ID=Glyma.04g017600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAGCCGACTCGGCGTGCTCCAAGAGCCACCGGATGGTCTTGCCGTCGAACTTGTGGTCGATCTCTTGGGTCAGCTGGAAGATCCGGGCGACGCAGGCGTTGGTCTACGGCATTGGTCTCTCCGAGGAGAGACATGGCCAAGCTGCAGGTCGGCGTCTCCTTGGTCTGGTGCGAGGGCAACCGTTGTGTGACGACGGACAACTCTTCTCTGCCATGGTGGTTCGCAAGCCGTTGGGCACTGAATTGTTAACAAAGGCAAACTTCAATTGGAAAATAACTTGGGCCTCAAAGCTTGAGAAGTGTTATTGCATCGTTGTTCTACCACAAAATGAGTTGGAAGTGAAAGCAGAAGACACAACATACACTATACCATGCCTTCTGCTCCTTCCAAACTCTACGCAGGTTCTCTGCATTCTCTCAATCCCTTATTCACTATATATGCAGGGTCCGATGTTTTGGGCGATGATGATATCAGAGCAGAAGGTGGCTCATTTGGCATTGAAGCCGTTGGGGAGGAACAATGCAATTGATGGAACGTGTGGAGTTGGAACGAAAGAACCCCAGCTTATTTTCGCTTCTGCAGACAGTGAGGAAATTGTTGATGATTAA
Predicted protein sequences of Glyma.04g017600
>Glyma.04g017600.1.p sequence-type=predicted peptide transcript=Glyma.04g017600.1 locus=Glyma.04g017600 ID=Glyma.04g017600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIADSACSKSHRMVLPSNLWSISWVSWKIRATQALVYGIGLSEERHGQAAGRRLLGLVRGQPLCDDGQLFSAMVVRKPLGTELLTKANFNWKITWASKLEKCYCIVVLPQNELEVKAEDTTYTIPCLLLLPNSTQVLCILSIPYSLYMQGPMFWAMMISEQKVAHLALKPLGRNNAIDGTCGVGTKEPQLIFASADILYCILRITFSWPKPFSK*

>Glyma.04g017600.2.p sequence-type=predicted peptide transcript=Glyma.04g017600.2 locus=Glyma.04g017600 ID=Glyma.04g017600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIADSACSKSHRMVLPSNLWSISWVSWKIRATQALVYGIGLSEERHGQAAGRRLLGLVRGQPLCDDGQLFSAMVVRKPLGTELLTKANFNWKITWASKLEKCYCIVVLPQNELEVKAEDTTYTIPCLLLLPNSTQVLCILSIPYSLYMQGPMFWAMMISEQKVAHLALKPLGRNNAIDGTCGVGTKEPQLIFASADSEEIVDD*






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