SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g016800

Feature Type:gene_model
Chromosome:Gm04
Start:1270897
stop:1273616
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.04g016800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20693.2AT HMG BETA 1,HMGB2,NFD02,NFD2 JGI N/AIEA
KOG0381 KOG HMG box-containing protein JGI N/AIEA
PF00505Pfam HMG (high mobility group) box JGI N/AIEA

Gene model name correspondences to Glyma.04g016800 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01840 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g016800
>Glyma.04g016800.3 sequence-type=CDS polypeptide=Glyma.04g016800.3.p locus=Glyma.04g016800 id=Glyma.04g016800.3.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAGGATGATGACGAGGAAGGCAGTGGCGAGGAGGAGGATGACGATTAG

>Glyma.04g016800.5 sequence-type=CDS polypeptide=Glyma.04g016800.5.p locus=Glyma.04g016800 id=Glyma.04g016800.5.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGAAAGGAGGAAAGTCCAAGACCGAATCTAAGAGAGCCGATGCCAAACTTGCTGTGAATAAGAAGGGCGCCGCCACCAAGACTAGGAAACCCGCCGGAAAGGGGAAGGCAGCGAAAGATCCTAACAAGCCAAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGAGGAATTCAGGAAGGTGTTCAACAAGGAACATCCCGACAACAAAGCAGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACGATGTCTGATGCTGAAAAAGCACCTTATGTGGCAAAGTCTGAGAAAAGGAAAGTGGAGTACGAGAAGAACATGAGAGCTTATAACAAGAAACAGGCGGAAGGTCCTACTGGTGGGGATGAAGAAGAATCTGAGAAGTCTGTATCTGAGGTGAATGATGAGGATGATGACGAGGAAGGCAGTGGCGAGGAGGAGGATGACGATTAG
Predicted protein sequences of Glyma.04g016800
>Glyma.04g016800.3.p sequence-type=predicted peptide transcript=Glyma.04g016800.3 locus=Glyma.04g016800 id=Glyma.04g016800.3.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD*

>Glyma.04g016800.5.p sequence-type=predicted peptide transcript=Glyma.04g016800.5 locus=Glyma.04g016800 id=Glyma.04g016800.5.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MKGGKSKTESKRADAKLAVNKKGAATKTRKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo