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Report for Sequence Feature Glyma.04g013200

Feature Type:gene_model
Chromosome:Gm04
Start:1001726
stop:1009022
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g013200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34450.1AT coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat JGI N/AIEA
GO:0030126GO-cc COPI vesicle coat EnsemblGenomesN/AIEA
GO:0030126GO-cc COPI vesicle coat JGI N/AIEA
GO:0030663GO-cc COPI-coated vesicle membrane EnsemblGenomesN/AIEA
GO:0031410GO-cc cytoplasmic vesicle EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
KOG1078 KOG Vesicle coat complex COPI, gamma subunit JGI N/AIEA
PTHR10261Panther COATOMER SUBUNIT GAMMA JGI N/AIEA
PF01602PFAM Adaptin N terminal region JGI N/AIEA
PF08752PFAM Coatomer gamma subunit appendage platform subdomain JGI N/AIEA

Expression Patterns of Glyma.04g013200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g013200
ParalogEvidenceComments
Glyma.06g013100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g013200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01470 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g013200
>Glyma.04g013200.1 sequence-type=CDS polypeptide=Glyma.04g013200.1.p locus=Glyma.04g013200 ID=Glyma.04g013200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCAGCCGCTTGTGAAGAAAGACGATGACCGCGACGACGAAGCTGACTATTCCCCCTTTCTTGGAATTGAAAAGGGGTCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAACTCCTATACCTACTGAATCAGGGAGAGACGTTTACAAAGGTTGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATACGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCAGATGAGGTTATCATCGTCACAAGCTCTCTCATGAAGGATATGAACAGCAAGATTGATATGTACCGAGCAAATGCCATTCGAGTGCTGTGTCGTATCACTGACGGAACCCTCCTTTCACAAATTGAGAGGTATTTAAAACAAGCCATTGTAGATAAAAATCCAGTTGTTGCAAGTGCTGCTCTAGTTAGTGGCATTCATCTACTCCAGACAAATCCTGAAATTGTAAAAAGATGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCCCTTGTACAATTTCATGCACTGGGTTTGCTGCATCAGATACGACAGAATGACCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAACTGTTCGCTCACCTTTAGCGCAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCATGAATCAGGCCATACACAGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGCCACAAGTCAGACATGGTGATTTTTGAAGCTGCCAGGGCAATAACAGAGCTCAATGGTGTAACAAGCCGAGAATTAACTCCAGCGATTACTGTTCTTCAGCTATTCTTAAGTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTACACTTTTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTTCCTTTAAAATATCGATCTCTGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGATACTTCACTTCCTGGGAATTGAAGGACCAAAAACATCAGACCCGAGCAAATATATCCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTAGGGCCAGTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGCGCTAAAGCCCCGCATATTTGTTCTGCTAAGGCGATGCCTTTTTGACAGTGATGATGAGGTTCGTGATAGGGCAACACTTTACCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTAAAGGACTTCCTGTTTGGGCCATTTGATGTCCCACTTGTCAATCTGGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACATTAACTCTGTGCCTAAGGAGGTCAAGTTCCAGCCTCTTGCAGAAAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCCCCAAGTGGTCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGGTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAGATTGTTGCAGCAGATTATGTGTTGAAAGTGGGGGTGTCTAATTTTAGGAATGCATGGGAAAGCTTGGGCCCTGATTTTGAGCGTGTGGATGAGTATGGTCTTGGTCCTAGAGAGAGTTTGGCTGAAGCTGTAAATACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCGGGTGTATTCACAGGGAATATAAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCAAAGGATATTGCAATGAAATTGTCTGTCAGATCTGAGGACGAAACTGTCAGCGATACCATTCATGAGATTGTGGCAAGCGGCTAG
Predicted protein sequences of Glyma.04g013200
>Glyma.04g013200.1.p sequence-type=predicted peptide transcript=Glyma.04g013200.1 locus=Glyma.04g013200 ID=Glyma.04g013200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAQPLVKKDDDRDDEADYSPFLGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDTGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALGLLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIHESGHTQSGERPFYDYLESCLRHKSDMVIFEAARAITELNGVTSRELTPAITVLQLFLSSTKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPNAKEAGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAIVRASAVSTLAKFGAAVDALKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGPFDVPLVNLETSLKNYEPSEEAFDINSVPKEVKFQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERMLSTIPECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIPEQLLEDVIVTVDASDADEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGVPTVGKFSNVLKFIIKEVDPTTGEAEDDGVEDEYQLEDLEIVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLEPCEGTEEVPPNSRSHTCLLSGVFTGNIKVLVRLSFGLDGPKDIAMKLSVRSEDETVSDTIHEIVASG*






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