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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT2G16370.1 | AT | thymidylate synthase 1 | JGI | N/A | IEA |
GO:0006231 | GO-bp | dTMP biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0006231 | GO-bp | dTMP biosynthetic process | JGI | N/A | IEA |
GO:0006545 | GO-bp | glycine biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0006545 | GO-bp | glycine biosynthetic process | JGI | N/A | IEA |
GO:0006730 | GO-bp | one-carbon metabolic process | EnsemblGenomes | N/A | IEA |
GO:0009165 | GO-bp | nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0009165 | GO-bp | nucleotide biosynthetic process | JGI | N/A | IEA |
GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
GO:0046654 | GO-bp | tetrahydrofolate biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
GO:0004146 | GO-mf | dihydrofolate reductase activity | EnsemblGenomes | N/A | IEA |
GO:0004146 | GO-mf | dihydrofolate reductase activity | JGI | N/A | IEA |
GO:0004799 | GO-mf | thymidylate synthase activity | EnsemblGenomes | N/A | IEA |
GO:0004799 | GO-mf | thymidylate synthase activity | JGI | N/A | IEA |
GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
KOG0673 | KOG | Thymidylate synthase | JGI | N/A | IEA |
PTHR11549 | Panther | DIHYDROFOLATE REDUCTASE | JGI | N/A | IEA |
PTHR11549:SF2 | Panther | THYMIDYLATE SYNTHASE | JGI | N/A | IEA |
PF00186 | PFAM | Dihydrofolate reductase | JGI | N/A | IEA |
PF00303 | PFAM | Thymidylate synthase | JGI | N/A | IEA |
PWY-3841 | SoyCyc9 | folate transformations II | Plant Metabolic Network | ISS | |
PWY-6614 | SoyCyc9 | tetrahydrofolate biosynthesis | Plant Metabolic Network | ISS | |
PWY-7184 | SoyCyc9 | pyrimidine deoxyribonucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
PWY-7187 | SoyCyc9 | pyrimidine deoxyribonucleotides de novo biosynthesis II | Plant Metabolic Network | ISS | |
PWY-7199 | SoyCyc9 | pyrimidine deoxyribonucleosides salvage | Plant Metabolic Network | ISS | |
PWY-7211 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
PWY0-166 | SoyCyc9 | superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) | Plant Metabolic Network | ISS | |
GN7V-62526 | SoyCyc9-rxn | thymidylate synthase | Plant Metabolic Network | ISS |
Glyma.04g010800 not represented in the dataset |
Glyma.04g010800 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.06g010600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma04g01244 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g010800.2 sequence-type=transcript locus=Glyma.04g010800 ID=Glyma.04g010800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 TCCAATCCAATTAATTAGGGTCGGATCCACCCTTTTTAAACAATTTGATTCGCTCCATAAACTACTAAACCCTAAAGAACCCTTGCTTCCCTGGCCTTCAATTTCGCGTTCATGCTGATTCATGACCCGACTCTAGACCCGATATAACCCAATCGGATCGGACACTCACCCGACCCGTTTTCTTCCCGTCTCTTTataacaacaacaacgccttatcccactaggtggggtcggctTTTTTTTTTCCCGTTTCTCTGCGAAAAAAAAATCCATAGCGGTTTTTCTCACTCTCAGCAGCTACTTTATTCCTCACTTTTTTCTTTCATTTTCTTATGACCTCTTCTCCTTCTTATTATAATTATAATATAAATATAAACATTCTTTCTGTTTGTACTTTGATAATGATCCTGAGTTGAAAAAGTTCGTGGAACTTTGCACCTTGTTAGGTCATATTCCTTTCAAAATTACGCGCTTCGGCTTGACATCGATTCCTTTGCACTTCCAAAAGAATTGGTTGTGCAGTCCTTGTTTTCAGACACCATCTTTAAGTTTCTGTCGACGTTTGAGTTCTATAATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAAAATCTGGGGATTCTCACTCCTTCGGGCTGTTTCTGCTTTTTGAAATGAGGCACAACCTTAGGAAGATTATGTTAAATCTGTGTACAATTAAAAGAACATATCGTAGGACTTAATTCATCGCATTCATACTGTTAGTGGGAATTCTTTGGCTCCACCTGATATGCCTCTAAGGTGATTTAGATTGACTTTTGAGGGTTCTGAAACTCGATGTTCAAGATAAGCGGTCTTTTTAAGTGGGCCATTTCTATTTTGTTTATTTGATATTTTGGACATGCAGCTTAAGTTCCTATTAATAAGTTTTTATAATACTAGTTTATGTCGTAAA
>Glyma.04g010800.1 sequence-type=CDS polypeptide=Glyma.04g010800.1.p locus=Glyma.04g010800 ID=Glyma.04g010800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA >Glyma.04g010800.2 sequence-type=CDS polypeptide=Glyma.04g010800.2.p locus=Glyma.04g010800 ID=Glyma.04g010800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA
>Glyma.04g010800.1.p sequence-type=predicted peptide transcript=Glyma.04g010800.1 locus=Glyma.04g010800 ID=Glyma.04g010800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAGDSSVMSNGYSKGSVNPLTNLRRTYQVLVAATQDWGIGKDGKLPWRLPTDLKFFKDITVKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTMFRPWYSSFPKVENNIRYCFTTYVRVRSSAPESPGQNIDQLLDNNSESMKFEVKEFSFLPKMISERHEEYLYLKLVQDIIAEGTTKDDRTGTGTLSKFGCQMRFNLHGSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHVYCNHVRPLQEQLHNQPKPFPTLEINPKKKDIDSFVAADFKLIGYDPHQKIDMKLAV* >Glyma.04g010800.2.p sequence-type=predicted peptide transcript=Glyma.04g010800.2 locus=Glyma.04g010800 ID=Glyma.04g010800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAGDSSVMSNGYSKGSVNPLTNLRRTYQVLVAATQDWGIGKDGKLPWRLPTDLKFFKDITVKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTMFRPWYSSFPKVENNIRYCFTTYVRVRSSAPESPGQNIDQLLDNNSESMKFEVKEFSFLPKMISERHEEYLYLKLVQDIIAEGTTKDDRTGTGTLSKFGCQMRFNLHGSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHVYCNHVRPLQEQLHNQPKPFPTLEINPKKKDIDSFVAADFKLIGYDPHQKIDMKLAV*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||