SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma.04g010800

Feature Type:gene_model
Chromosome:Gm04
Start:843870
stop:849813
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16370.1AT thymidylate synthase 1 JGI N/AIEA
GO:0006231GO-bp dTMP biosynthetic process EnsemblGenomesN/AIEA
GO:0006231GO-bp dTMP biosynthetic process JGI N/AIEA
GO:0006545GO-bp glycine biosynthetic process EnsemblGenomesN/AIEA
GO:0006545GO-bp glycine biosynthetic process JGI N/AIEA
GO:0006730GO-bp one-carbon metabolic process EnsemblGenomesN/AIEA
GO:0009165GO-bp nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0009165GO-bp nucleotide biosynthetic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0046654GO-bp tetrahydrofolate biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004146GO-mf dihydrofolate reductase activity EnsemblGenomesN/AIEA
GO:0004146GO-mf dihydrofolate reductase activity JGI N/AIEA
GO:0004799GO-mf thymidylate synthase activity EnsemblGenomesN/AIEA
GO:0004799GO-mf thymidylate synthase activity JGI N/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0673 KOG Thymidylate synthase JGI N/AIEA
PTHR11549Panther DIHYDROFOLATE REDUCTASE JGI N/AIEA
PTHR11549:SF2Panther THYMIDYLATE SYNTHASE JGI N/AIEA
PF00186PFAM Dihydrofolate reductase JGI N/AIEA
PF00303PFAM Thymidylate synthase JGI N/AIEA
PWY-3841SoyCyc9 folate transformations II Plant Metabolic Network ISS
PWY-6614SoyCyc9 tetrahydrofolate biosynthesis Plant Metabolic Network ISS
PWY-7184SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis I Plant Metabolic Network ISS
PWY-7187SoyCyc9 pyrimidine deoxyribonucleotides de novo biosynthesis II Plant Metabolic Network ISS
PWY-7199SoyCyc9 pyrimidine deoxyribonucleosides salvage Plant Metabolic Network ISS
PWY-7211SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis Plant Metabolic Network ISS
PWY0-166SoyCyc9 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) Plant Metabolic Network ISS
GN7V-62526SoyCyc9-rxn thymidylate synthase Plant Metabolic Network ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g010800 not represented in the dataset

Glyma.04g010800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.06g010600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01244 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.04g010800.2 sequence-type=transcript locus=Glyma.04g010800 ID=Glyma.04g010800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCAATCCAATTAATTAGGGTCGGATCCACCCTTTTTAAACAATTTGATTCGCTCCATAAACTACTAAACCCTAAAGAACCCTTGCTTCCCTGGCCTTCAATTTCGCGTTCATGCTGATTCATGACCCGACTCTAGACCCGATATAACCCAATCGGATCGGACACTCACCCGACCCGTTTTCTTCCCGTCTCTTTataacaacaacaacgccttatcccactaggtggggtcggctTTTTTTTTTCCCGTTTCTCTGCGAAAAAAAAATCCATAGCGGTTTTTCTCACTCTCAGCAGCTACTTTATTCCTCACTTTTTTCTTTCATTTTCTTATGACCTCTTCTCCTTCTTATTATAATTATAATATAAATATAAACATTCTTTCTGTTTGTACTTTGATAATGATCCTGAGTTGAAAAAGTTCGTGGAACTTTGCACCTTGTTAGGTCATATTCCTTTCAAAATTACGCGCTTCGGCTTGACATCGATTCCTTTGCACTTCCAAAAGAATTGGTTGTGCAGTCCTTGTTTTCAGACACCATCTTTAAGTTTCTGTCGACGTTTGAGTTCTATAATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAAAATCTGGGGATTCTCACTCCTTCGGGCTGTTTCTGCTTTTTGAAATGAGGCACAACCTTAGGAAGATTATGTTAAATCTGTGTACAATTAAAAGAACATATCGTAGGACTTAATTCATCGCATTCATACTGTTAGTGGGAATTCTTTGGCTCCACCTGATATGCCTCTAAGGTGATTTAGATTGACTTTTGAGGGTTCTGAAACTCGATGTTCAAGATAAGCGGTCTTTTTAAGTGGGCCATTTCTATTTTGTTTATTTGATATTTTGGACATGCAGCTTAAGTTCCTATTAATAAGTTTTTATAATACTAGTTTATGTCGTAAA

>Glyma.04g010800.1 sequence-type=CDS polypeptide=Glyma.04g010800.1.p locus=Glyma.04g010800 ID=Glyma.04g010800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA

>Glyma.04g010800.2 sequence-type=CDS polypeptide=Glyma.04g010800.2.p locus=Glyma.04g010800 ID=Glyma.04g010800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGGTGATTCTTCTGTAATGTCCAATGGATACAGCAAGGGCAGTGTCAATCCACTAACTAACCTGCGAAGGACTTACCAAGTGTTAGTGGCTGCCACTCAAGATTGGGGCATCGGTAAGGATGGGAAATTACCCTGGAGATTGCCCACTGATCTCAAGTTTTTTAAGGACATTACTGTGAAAACATCCGATCCTGGGAAGAAGAATGCCATTGTAATGGGAAGGAAAACATGGGAGAGTATCCCTCTTGAGTACAGGCCTCTTTCTGGTCGCCTTAATGTTGTTCTTACTCGCTCAGGCAGCTTTGATATTGCAACAGCAGAGAATGTTGTTATATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGAGAGGCTCTCAATGCGCCTGGATGTGAAGCTATCCACTTAACAGAAATTCAGTCAAGTATTGAGTGTGACACTTTTATGCCTCCAGTTGATTTCACTATGTTTCGGCCATGGTACTCATCCTTTCCTAAAGTGGAAAACAACATCCGCTATTGTTTCACCACTTATGTGCGTGTGCGGAGTTCTGCTCCAGAGTCCCCGGGTCAGAACATTGATCAACTTCTTGATAATAATTCTGAGTCCATGAAATTTGAGGTCAAGGAATTTTCTTTTCTTCCTAAAATGATTTCTGAGAGACATGAGGAGTATCTATATCTTAAGCTGGTTCAAGACATCATTGCTGAAGGTACAACTAAGGATGATAGGACAGGGACTGGTACCTTGTCAAAATTTGGTTGCCAGATGAGGTTCAATCTGCACGGAAGCTTTCCTCTTCTAACAACTAAGAGAGTATTTTGGCGAGGGGTTGTTGAAGAGCTTCTTTGGTTTATCAGTGGGTCAACGAATGCCAAGGTGCTACAGGAAAAAGGCATTCATATTTGGGATGGCAATGCATCCAGAGAATACCTTGATGGTGTTGGTTTGACAGAGAGGGAGGAGGGCGACTTGGGACCTGTTTATGGGTTTCAATGGAGGCACTTTGGTGCCAGATATACTGACATGCATCATGACTACTCCGGTCAAGGGTTTGATCAGCTTTTAGATGTTATTAACAAGATAAAGCATAATCCTGATGATCGGCGAATTATTCTCTCTGCATGGAATCCATCTGATCTTAAATTAATGGCACTTCCACCCTGCCACATGTTTGCACAGTTTTATGTAGCACACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACATGGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCATGTTTGTGATCTCATTCCAGGTGATTTTATCCATGTTATTGGGGATGCACATGTTTACTGCAATCATGTGAGGCCTTTGCAGGAGCAGCTCCATAACCAGCCAAAACCTTTTCCAACTTTGGAGATAAATCCAAAAAAGAAAGATATAGATTCTTTTGTGGCTGCTGATTTCAAGCTCATAGGCTATGATCCTCACCAGAAGATTGATATGAAGCTGGCTGTCTAA

>Glyma.04g010800.1.p sequence-type=predicted peptide transcript=Glyma.04g010800.1 locus=Glyma.04g010800 ID=Glyma.04g010800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGDSSVMSNGYSKGSVNPLTNLRRTYQVLVAATQDWGIGKDGKLPWRLPTDLKFFKDITVKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTMFRPWYSSFPKVENNIRYCFTTYVRVRSSAPESPGQNIDQLLDNNSESMKFEVKEFSFLPKMISERHEEYLYLKLVQDIIAEGTTKDDRTGTGTLSKFGCQMRFNLHGSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHVYCNHVRPLQEQLHNQPKPFPTLEINPKKKDIDSFVAADFKLIGYDPHQKIDMKLAV*

>Glyma.04g010800.2.p sequence-type=predicted peptide transcript=Glyma.04g010800.2 locus=Glyma.04g010800 ID=Glyma.04g010800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGDSSVMSNGYSKGSVNPLTNLRRTYQVLVAATQDWGIGKDGKLPWRLPTDLKFFKDITVKTSDPGKKNAIVMGRKTWESIPLEYRPLSGRLNVVLTRSGSFDIATAENVVICGSMSSALELLAASPYSLSIEKVFVIGGGQIFREALNAPGCEAIHLTEIQSSIECDTFMPPVDFTMFRPWYSSFPKVENNIRYCFTTYVRVRSSAPESPGQNIDQLLDNNSESMKFEVKEFSFLPKMISERHEEYLYLKLVQDIIAEGTTKDDRTGTGTLSKFGCQMRFNLHGSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASREYLDGVGLTEREEGDLGPVYGFQWRHFGARYTDMHHDYSGQGFDQLLDVINKIKHNPDDRRIILSAWNPSDLKLMALPPCHMFAQFYVAHGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLIPGDFIHVIGDAHVYCNHVRPLQEQLHNQPKPFPTLEINPKKKDIDSFVAADFKLIGYDPHQKIDMKLAV*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo