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Report for Sequence Feature Glyma.04g009900

Feature Type:gene_model
Chromosome:Gm04
Start:778027
stop:779289
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g009900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21490.1AT dehydrin LEA JGI N/AIEA
GO:0006950GO-bp response to stress EnsemblGenomesN/AIEA
GO:0006950GO-bp response to stress JGI N/AIEA
GO:0009414GO-bp response to water deprivation EnsemblGenomesN/AIEA
GO:0009415GO-bp response to water EnsemblGenomesN/AIEA
GO:0009415GO-bp response to water JGI N/AIEA
GO:0009631GO-bp cold acclimation EnsemblGenomesN/AIEA
GO:0009737GO-bp response to abscisic acid EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
PF00257PFAM Dehydrin JGI N/AIEA

Proteins Associated with Glyma.04g009900
LocusGene SymbolProtein Name
PM12 dehydrin

Expression Patterns of Glyma.04g009900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g009900 not represented in the dataset
Glyma.04g009900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g009900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01181 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g009900
>Glyma.04g009900.1 sequence-type=CDS polypeptide=Glyma.04g009900.1.p locus=Glyma.04g009900 ID=Glyma.04g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGAAGCACAACTACGAGACCAGCATGGCAACCCTGTCCCACTCACCGATCAATACGGTAATCCGGTTATCTTAACTGACGAGCGCGGTAATCCCGTCCAACTCACTGGTGTCGCTACCACCGCTACCGGCACAGCAGGTTCTGGGTTTGGGTCCTATGGTACCGGTGCTTACGGTGGTGGTGCAAGTGCAACCACCGTTGCAGATCTTTTGGCAACCCAACCAAGGAGTGGCAGGGAGGCTAGAGAGCTTCGTCGTTCCTCCAGTTCAAGCTCTAGCTCGTCTGAGGATGATGGGCAAGGTGGGAGGAGGAAGAAGGGAGTGAAGGATAAAATAAAAGAGAAACTACCAGGGGTAGGAGGAGGGAATAATAATAAGGAGCATGCACACACAACAACTGCTCCAACCACCGCCACTAACCACCCTGCTGATCAGCATGAGAAGAAGGGCATAATGGAGAGGATCAAAGAAAAATTGCCTGGCCACCACACCCACTGA
Predicted protein sequences of Glyma.04g009900
>Glyma.04g009900.1.p sequence-type=predicted peptide transcript=Glyma.04g009900.1 locus=Glyma.04g009900 ID=Glyma.04g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEAQLRDQHGNPVPLTDQYGNPVILTDERGNPVQLTGVATTATGTAGSGFGSYGTGAYGGGASATTVADLLATQPRSGREARELRRSSSSSSSSSEDDGQGGRRKKGVKDKIKEKLPGVGGGNNNKEHAHTTTAPTTATNHPADQHEKKGIMERIKEKLPGHHTH*






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