Glyma.04g009800

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Report for Sequence Feature Glyma.04g009800

Feature Type:	gene_model
Chromosome:	Gm04
Start:	773392
stop:	776923
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g009800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39120.1	AT	myo-inositol monophosphatase like 2	JGI	N/A	IEA
GO:0016311	GO-bp	dephosphorylation	EnsemblGenomes	N/A	IEA
GO:0046854	GO-bp	phosphatidylinositol phosphorylation	EnsemblGenomes	N/A	IEA
GO:0046854	GO-bp	phosphatidylinositol phosphorylation	JGI	N/A	IEA
GO:0004401	GO-mf	histidinol-phosphatase activity	EnsemblGenomes	N/A	IEA
KOG2951	KOG	Inositol monophosphatase	JGI	N/A	IEA
PTHR20854	Panther	INOSITOL MONOPHOSPHATASE	JGI	N/A	IEA
PTHR20854:SF12	Panther		JGI	N/A	IEA
PF00459	PFAM	Inositol monophosphatase family	JGI	N/A	IEA
HISTSYN-PWY	SoyCyc9	L-histidine biosynthesis	Plant Metabolic Network		ISS
PWY-2301	SoyCyc9	myo-inositol biosynthesis	Plant Metabolic Network		ISS
PWY-4702	SoyCyc9	phytate degradation I	Plant Metabolic Network		ISS
PWY-6363	SoyCyc9	D-myo-inositol (1,4,5)-trisphosphate degradation	Plant Metabolic Network		ISS
PWY-882	SoyCyc9	L-ascorbate biosynthesis I (L-galactose pathway)	Plant Metabolic Network		ISS
GN7V-62723	SoyCyc9-rxn	Enzyme name not determined	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g009800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g009800 not represented in the dataset	Glyma.04g009800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g009800

Paralog	Evidence	Comments
Glyma.06g009800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g009800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g01170	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g009800

Limit To All Plant Sequences

>Glyma.04g009800.2 sequence-type=transcript locus=Glyma.04g009800 ID=Glyma.04g009800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAACTCCTCATTTGTTTTTTGTGTGTTTAGTATCAGCTGCCATTGAAGCCACGAAGCAAAGAGATTGAGAGTGGCAATTGCAATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAAGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGATAGCTTGAATTAATCTTCAGTGCAAATAATCTTCTCTGCAAATGGTCTTGATTCAGATGTTCCTAAGGACATGTATTACCGTACCATTTTCTGGCATTTAAGTTGAAAACCATGTACTCAGAATCTTGAATAAGTTCCTGCAGAAATTAACCTCTTTCTCTATTGGTTGGTCACGAACTCTTCAACACCTTGTAACAAGTTCCAAATTCAAAATAAACTCTATAAATAAATTTGAAAACTCTAACCAGAAGTTTTTCAAAAT

Coding sequences of Glyma.04g009800

Limit To All Plant Sequences

>Glyma.04g009800.1 sequence-type=CDS polypeptide=Glyma.04g009800.1.p locus=Glyma.04g009800 ID=Glyma.04g009800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAACTTTGTCTTATTTGCATGTGGCAGGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

>Glyma.04g009800.2 sequence-type=CDS polypeptide=Glyma.04g009800.2.p locus=Glyma.04g009800 ID=Glyma.04g009800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTCACAGTGCCATTTTCTCTCTCACTCCCCAATTCCCAATACTACCTTTCGTCTCAGAGCCATGGCGCCTCACAGCACGCCTCTTGAACTCAATCGCTTCGCCGAGGTCGGTAACAAAGTCGCCGATGCTGCCGGAGAAGTTATCCGCAAATACTTCAGAAAAAACTTCGACGTTATTCACAAACATGATCTCAGTCCAGTAACCATTGCAGATCAATCTGCTGAGGAGGCTATGGTTTCAATCATACTAGACAATTTCCCTTCTCATGCCATTTACGGAGAGGAAAATGGGTGGAGGTGTGAAGAAAAGAATGCTGATTATGTTTGGGTATTAGATCCCATAGATGGGACTAAGAGCTTTATTACTGGGAAACCTGTATTTGGTACTCTCGTTGCTCTTCTACAAAATGGCACACCAATCCTTGGCATAATTGATCAACCTGTGTTAAGAGAAAGGTGGATCGGGATAGCAGGAAAGAGAACCTCACTGAACGGACAAGAAATATCTACACGCACTTGTGCGGACCTTTCTCAAGCATACCTGTACACCACAAGCCCACATCTGTTCAGTGGAGATGCAGAAGAGGCATTCATTCGTGTTAGAAGCAAGGTTAAAATTCCATTGTATGGCTGCGACTGCTATGCATATGCACTTTTGTCTTCTGGTTTTGTGGATCTTGTTGTTGAGTCTGGTCTGAAGCCATACGATTTTCTTGCATTGATTCCTGTTATTGAAGGCGCTGGAGGTGTCATAACTGATTGGAAAGGAGATAAACTGTTTTGGGAAGCTTCTCCACTTTCAATCGCCACAAGTTTTAATGTTGTGGCTGCTGGTGACAAACAGATTCATCAACAAGCTCTAGATTCATTGCAGTGGAAGTGA

Predicted protein sequences of Glyma.04g009800

Limit To All Plant Sequences

>Glyma.04g009800.1.p sequence-type=predicted peptide transcript=Glyma.04g009800.1 locus=Glyma.04g009800 ID=Glyma.04g009800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFSQCHFLSHSPIPNTTFRLRAMAPHSTPLELNRFAEVGNKVADAAGEVIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDNFPSHAIYGEENGWRCEEKNADYVWVLDPIDGTKSFITGKPVFGTLVALLQNGTPILGIIDQPVLRERWIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATTLSYLHVAGFNVVAAGDKQIHQQALDSLQWK*

>Glyma.04g009800.2.p sequence-type=predicted peptide transcript=Glyma.04g009800.2 locus=Glyma.04g009800 ID=Glyma.04g009800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFSQCHFLSHSPIPNTTFRLRAMAPHSTPLELNRFAEVGNKVADAAGEVIRKYFRKNFDVIHKHDLSPVTIADQSAEEAMVSIILDNFPSHAIYGEENGWRCEEKNADYVWVLDPIDGTKSFITGKPVFGTLVALLQNGTPILGIIDQPVLRERWIGIAGKRTSLNGQEISTRTCADLSQAYLYTTSPHLFSGDAEEAFIRVRSKVKIPLYGCDCYAYALLSSGFVDLVVESGLKPYDFLALIPVIEGAGGVITDWKGDKLFWEASPLSIATSFNVVAAGDKQIHQQALDSLQWK*

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