Glyma.04g009300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g009300

Feature Type:	gene_model
Chromosome:	Gm04
Start:	741743
stop:	743038
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g009300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75520.1	AT	SHI-related sequence 5	JGI	N/A	IEA
PF05142	PFAM	Domain of unknown function (DUF702)	JGI	N/A	IEA

Expression Patterns of Glyma.04g009300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g009300 not represented in the dataset	Glyma.04g009300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g009300

Paralog	Evidence	Comments
Glyma.06g009200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g009300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g01125	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g009300

Limit To All Plant Sequences

>Glyma.04g009300.2 sequence-type=transcript locus=Glyma.04g009300 ID=Glyma.04g009300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGTATGCCATATTAATATCACATACCCATCAAGATCCTAATTAATTGGTTTCTTTAATAATATCTTGCTCATGAAGAACATGCATGACAGGGCAAGAGGCATTTATGGATGGATATGAGGAAAGTACTAATTAAGAATAGAATGGAATATCGGCGTTGATGGATATGAAATACTTACTTTAGCTAGCTATCTAGCCACCTTAATTTGTGGAGCATTTTATATTTTAATGCTCAAGAAATAAACACGCAATGTGTCATGCCCTAGAAACAAATTTATTAATTAAACAAATGCGATCGAGAGTGATTGTTCTTTACTTGTTGAAATACCGATGACTAGATTTGTTCCCTTAATCAATTTGTTCAAAC

Coding sequences of Glyma.04g009300

Limit To All Plant Sequences

>Glyma.04g009300.1 sequence-type=CDS polypeptide=Glyma.04g009300.1.p locus=Glyma.04g009300 ID=Glyma.04g009300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGGCAAGAGGCATTTATGGATGGATATGAGGAAAGTACTAATTAA

>Glyma.04g009300.2 sequence-type=CDS polypeptide=Glyma.04g009300.2.p locus=Glyma.04g009300 ID=Glyma.04g009300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAAGGGCGACGCAACAAGGCATATCAAGTTCAAGGGGTTCAAAGTGCCATGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGAACTTGCTGTAAAAACAAAGGCTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAATATTAGGAGACGCCATATTCCTCAAAATCACAACCCATATTCAGGATTAGAGTTGAAATTTCCGGGTGCTACAAATTCGATGGCTATATTTCGGTGCGTGAAGGTTCGTTCTATGGATGATGCGGTTTATGAAATAGCGTATCAAACATCTGTGAACATCGGAGGGCATGTATTTAATGGACTACTATATGATCAAGGTCCTGACCAAAGCTATAATAATAATTGTAAGGGTGAAAGTTCCACGAGCCTTGTTGATCAGCAGCAGAATAATCTGGGTTTTGTGAATATTAATAATGGTTCAATCCAGAGTAGAGATAGTAGTGGTGCAAGTGCAAGTGCAACTATGGCTTCTGTTGGTCCGGAAGAGACTCTTTTAACTCCATCACCATATCCGTTTTCCCTTGCTTCTTTCAGGTCCGGTATGCCATATTAA

Predicted protein sequences of Glyma.04g009300

Limit To All Plant Sequences

>Glyma.04g009300.1.p sequence-type=predicted peptide transcript=Glyma.04g009300.1 locus=Glyma.04g009300 ID=Glyma.04g009300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRATQQGISSSRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRHIPQNHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQSYNNNCKGESSTSLVDQQQNNLGFVNINNGSIQSRDSSGASASATMASVGPEETLLTPSPYPFSLASFRSGQEAFMDGYEESTN*

>Glyma.04g009300.2.p sequence-type=predicted peptide transcript=Glyma.04g009300.2 locus=Glyma.04g009300 ID=Glyma.04g009300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRATQQGISSSRGSKCHDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDNIRRRHIPQNHNPYSGLELKFPGATNSMAIFRCVKVRSMDDAVYEIAYQTSVNIGGHVFNGLLYDQGPDQSYNNNCKGESSTSLVDQQQNNLGFVNINNGSIQSRDSSGASASATMASVGPEETLLTPSPYPFSLASFRSGMPY*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain