Glyma.04g009000

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Report for Sequence Feature Glyma.04g009000

Feature Type:	gene_model
Chromosome:	Gm04
Start:	700411
stop:	706284
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g009000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34660.1	AT	SH3 domain-containing protein	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG1118	KOG	Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation	JGI	N/A	IEA
PTHR22820	Panther	SH2 DOMAIN ADAPTOR PROTEIN	JGI	N/A	IEA
PTHR22820:SF9	Panther	PROTEIN ENHANCER OF SEVENLESS 2B	JGI	N/A	IEA
PF00018	PFAM	SH3 domain	JGI	N/A	IEA

Expression Patterns of Glyma.04g009000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g009000 not represented in the dataset	Glyma.04g009000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g009000

Paralog	Evidence	Comments
Glyma.06g008900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g009000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g01100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g009000

Limit To All Plant Sequences

>Glyma.04g009000.2 sequence-type=transcript locus=Glyma.04g009000 ID=Glyma.04g009000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGGAACAAAGGCCCTTCTATAGAGTGTAATAATTTTTGAAAAACCTCTGTCTCTGTTGTTTCTGATGCAAATCTCCGTTGTCGTTGGTGTTTCGGTCTGAAATCAAATCAAAATCAACACTGTGCGCTGCGGTTAGAAGAGATTCAATCTGAATCTGAATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGCTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTTTGAATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACAAGTTTTTTTGTTTTTTTTCTTCTCTTGTGATTATCAATCGCTTTATGATTCTCTTTTCTATTAGAATGATAATAGGTATGGTTTAGTTAAAGTATTAAATATTTATACTCTCCTTGTTAAAAAAAAATAAAAATGTATCTAAATTGAGGATGCAATTCA

>Glyma.04g009000.3 sequence-type=transcript locus=Glyma.04g009000 ID=Glyma.04g009000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCCATGATGCAATTTACTGTCCTCCTGAGCCATGATACTGGGGTGGATATTGATTGGGTCCATAGATTTGGCCTTGACTCCCCCCACCCCTGAACAGGAAAGTAAATTTTTAAAAAAAGAAAAATAATACTGTTTTACAATACCAGTAACCTGTCCCTGTGAGACATTGGGACACTAATTGAAGAGATATTGTTCGTATGACTGTGGTCTGCAATATGATGGTAGCCTTTTTCTTTTTCCGTGAAAGGGGTGAGCATAAATCAGAAGATCACTGAATTTTTTCTTTAGAGGATACCTTATCCTCCCTCATGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGCTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTTTGAATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACAAGTTTTTTTGTTTTTTTTCTTCTCTTGTGATTATCAATCGCTTTATGATTCTCTTTTCTATTAGAATGATAATAGGTATGGTTTAGTTAAAGTATTAAATATTTATACTCTCCTTGTTAAAAAAAAATAAAAATGTATCTAAATTGAGGATGCAATTCA

Coding sequences of Glyma.04g009000

Limit To All Plant Sequences

>Glyma.04g009000.1 sequence-type=CDS polypeptide=Glyma.04g009000.1.p locus=Glyma.04g009000 ID=Glyma.04g009000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATTTCTTTTGTTATTTTTTATGATAAGATTCAATTCATTTTTTGCTCCTTGTTTTATTTCCTGTTCTCTAATGTTCCTCAGTTTTGCTTGCTTCCTTTCTATTCAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma.04g009000.2 sequence-type=CDS polypeptide=Glyma.04g009000.2.p locus=Glyma.04g009000 ID=Glyma.04g009000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma.04g009000.3 sequence-type=CDS polypeptide=Glyma.04g009000.3.p locus=Glyma.04g009000 ID=Glyma.04g009000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

Predicted protein sequences of Glyma.04g009000

Limit To All Plant Sequences

>Glyma.04g009000.1.p sequence-type=predicted peptide transcript=Glyma.04g009000.1 locus=Glyma.04g009000 ID=Glyma.04g009000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFLLLFFMIRFNSFFAPCFISCSLMFLSFACFLSIQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma.04g009000.2.p sequence-type=predicted peptide transcript=Glyma.04g009000.2 locus=Glyma.04g009000 ID=Glyma.04g009000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma.04g009000.3.p sequence-type=predicted peptide transcript=Glyma.04g009000.3 locus=Glyma.04g009000 ID=Glyma.04g009000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

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