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Report for Sequence Feature Glyma.04g009000

Feature Type:gene_model
Chromosome:Gm04
Start:700411
stop:706284
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g009000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34660.1AT SH3 domain-containing protein JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1118 KOG Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation JGI N/AIEA
PTHR22820Panther SH2 DOMAIN ADAPTOR PROTEIN JGI N/AIEA
PTHR22820:SF9Panther PROTEIN ENHANCER OF SEVENLESS 2B JGI N/AIEA
PF00018PFAM SH3 domain JGI N/AIEA

Expression Patterns of Glyma.04g009000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g009000
ParalogEvidenceComments
Glyma.06g008900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g009000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01100 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g009000
>Glyma.04g009000.2 sequence-type=transcript locus=Glyma.04g009000 ID=Glyma.04g009000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGGAACAAAGGCCCTTCTATAGAGTGTAATAATTTTTGAAAAACCTCTGTCTCTGTTGTTTCTGATGCAAATCTCCGTTGTCGTTGGTGTTTCGGTCTGAAATCAAATCAAAATCAACACTGTGCGCTGCGGTTAGAAGAGATTCAATCTGAATCTGAATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGCTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTTTGAATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACAAGTTTTTTTGTTTTTTTTCTTCTCTTGTGATTATCAATCGCTTTATGATTCTCTTTTCTATTAGAATGATAATAGGTATGGTTTAGTTAAAGTATTAAATATTTATACTCTCCTTGTTAAAAAAAAATAAAAATGTATCTAAATTGAGGATGCAATTCA

>Glyma.04g009000.3 sequence-type=transcript locus=Glyma.04g009000 ID=Glyma.04g009000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCCATGATGCAATTTACTGTCCTCCTGAGCCATGATACTGGGGTGGATATTGATTGGGTCCATAGATTTGGCCTTGACTCCCCCCACCCCTGAACAGGAAAGTAAATTTTTAAAAAAAGAAAAATAATACTGTTTTACAATACCAGTAACCTGTCCCTGTGAGACATTGGGACACTAATTGAAGAGATATTGTTCGTATGACTGTGGTCTGCAATATGATGGTAGCCTTTTTCTTTTTCCGTGAAAGGGGTGAGCATAAATCAGAAGATCACTGAATTTTTTCTTTAGAGGATACCTTATCCTCCCTCATGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGAATGTTTCTGCTTGGTTGAGTTGGTGGTTTCCTGCCTCAGGGATTTTGAATGTGCGTATGTTTTGGTTTTGTGCTTAATGGATAACGTGTGCTTAGCATACAACAATCGATTTGTGATATATAGATGACAAGTTTTTTTGTTTTTTTTCTTCTCTTGTGATTATCAATCGCTTTATGATTCTCTTTTCTATTAGAATGATAATAGGTATGGTTTAGTTAAAGTATTAAATATTTATACTCTCCTTGTTAAAAAAAAATAAAAATGTATCTAAATTGAGGATGCAATTCA
Coding sequences of Glyma.04g009000
>Glyma.04g009000.1 sequence-type=CDS polypeptide=Glyma.04g009000.1.p locus=Glyma.04g009000 ID=Glyma.04g009000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATTTCTTTTGTTATTTTTTATGATAAGATTCAATTCATTTTTTGCTCCTTGTTTTATTTCCTGTTCTCTAATGTTCCTCAGTTTTGCTTGCTTCCTTTCTATTCAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma.04g009000.2 sequence-type=CDS polypeptide=Glyma.04g009000.2.p locus=Glyma.04g009000 ID=Glyma.04g009000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCTATCAGAAAGCAAGCCTCCAAACTTCGAGAACAGGTCGCTCGTCAACAACAGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA

>Glyma.04g009000.3 sequence-type=CDS polypeptide=Glyma.04g009000.3.p locus=Glyma.04g009000 ID=Glyma.04g009000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTGCTTAAACAGTTTGGGGCTGGGGGATATGGAGGATCAGATAATATGGTTACTGATGAGGTAGAGCTTCAGCAACATCAGAAACTTGAGAAGCTTTACATATCAACACGTGCTGGAAAGCATTATCAAAGGGATATTGTCCGTGGTGTGGAAGGTTATATTGTAACTGGATCCAAGCAAGTTGAAATAGGAACAAAGTTATCAGAAGATAACAGGAAATATGGTGCAGATAATACGTGTACCAGTGGTAGTACATTATCAAGAGCTGCGCTAAATTATGCACATGCCCGTGCACAAATGGAGAAGGAGCGTGGGAGCTTACTAAAAGCTCTTGGCACACAGGTTGCAGAGCCCTTGAGAGCAATGGTGATGGGAGCTCCATTGGAGGATGCCCGGCATCTTGCTCAACGTTATGACAGAATGCGGCAGGAAGCCGAAGCACAGGCTATTGAAGTTTCCAAACGCCAGGCAAAAGTAAGAGAAACACCAGGCAATGCTGAGAATGCTATGAAGCTGGAAGCAGCTGAAACAAAGCTGCAAGACCTGAAGACAAACATGGCCATATTGGGAAAAGAAGCAGCTGCCGCAATGGCTGCTGTAGAAGCACAGCAACAGAGGTTAACCCTCCAGCGTCTTATAGCTATGGTTGAAGCAGAGCATGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGATGATATCAGAACGACAACGAATTGAAGCCCCTCCTACACCTAGTGTGGATAGCAGCATGACACCACCCCCATCATATGAAGAAGTAAATGGTGTATGTGCTTCTCAAGCACATAATGGCTCAACAGATAGTATGGGTTACTTCTTAGGAGAGGTGTTATTTCCCTACCATGCTGAGTCTGAAGTTGAATTGAATCTATCCGTCGGAGATTATATTGTCGTTCGAAAGGTGACAAACAATGGATGGGCTGAGGGTGAATGCAAAGGGAAAGCAGGTTGGTTTCCATTTGGTTACATTGAAAGAAGGGAGCGAGTCCTCGCAAGCAAGGTGGCTGAAGTGTTTTGA
Predicted protein sequences of Glyma.04g009000
>Glyma.04g009000.1.p sequence-type=predicted peptide transcript=Glyma.04g009000.1 locus=Glyma.04g009000 ID=Glyma.04g009000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKFLLLFFMIRFNSFFAPCFISCSLMFLSFACFLSIQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma.04g009000.2.p sequence-type=predicted peptide transcript=Glyma.04g009000.2 locus=Glyma.04g009000 ID=Glyma.04g009000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAIRKQASKLREQVARQQQAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*

>Glyma.04g009000.3.p sequence-type=predicted peptide transcript=Glyma.04g009000.3 locus=Glyma.04g009000 ID=Glyma.04g009000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVLKQFGAGGYGGSDNMVTDEVELQQHQKLEKLYISTRAGKHYQRDIVRGVEGYIVTGSKQVEIGTKLSEDNRKYGADNTCTSGSTLSRAALNYAHARAQMEKERGSLLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVSKRQAKVRETPGNAENAMKLEAAETKLQDLKTNMAILGKEAAAAMAAVEAQQQRLTLQRLIAMVEAEHAYHQRVLQILDQLEGEMISERQRIEAPPTPSVDSSMTPPPSYEEVNGVCASQAHNGSTDSMGYFLGEVLFPYHAESEVELNLSVGDYIVVRKVTNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF*






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