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Report for Sequence Feature Glyma.04g008300

Feature Type:gene_model
Chromosome:Gm04
Start:632922
stop:635094
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g008300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21330.1AT fructose-bisphosphate aldolase 1 JGI N/AIEA
AT4G38970.2AT fructose-bisphosphate aldolase 2 JGI N/AIEA
GO:0006096GO-bp glycolytic process EnsemblGenomesN/AIEA
GO:0006096GO-bp glycolysis JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004332GO-mf fructose-bisphosphate aldolase activity EnsemblGenomesN/AIEA
GO:0004332GO-mf fructose-bisphosphate aldolase activity JGI N/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
KOG1557 KOG Fructose-biphosphate aldolase JGI N/AIEA
PTHR11627Panther FRUCTOSE-BISPHOSPHATE ALDOLASE JGI N/AIEA
PF00274PFAM Fructose-bisphosphate aldolase class-I JGI N/AIEA
CALVIN-PWYSoyCyc9 Calvin-Benson-Bassham cycle Plant Metabolic Network ISS
GLUCONEO-PWYSoyCyc9 gluconeogenesis I Plant Metabolic Network ISS
GLYCOLYSISSoyCyc9 glycolysis I (from glucose 6-phosphate) Plant Metabolic Network ISS
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-1042SoyCyc9 glycolysis IV (plant cytosol) Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-5484SoyCyc9 glycolysis II (from fructose 6-phosphate) Plant Metabolic Network ISS
PWY-7345SoyCyc9 superpathway of anaerobic sucrose degradation Plant Metabolic Network ISS
SUCSYN-PWYSoyCyc9 sucrose biosynthesis I (from photosynthesis) Plant Metabolic Network ISS
GN7V-64230SoyCyc9-rxn fructose-bisphosphate aldolase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g008300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g008300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g01020 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g008300
>Glyma.04g008300.2 sequence-type=transcript locus=Glyma.04g008300 ID=Glyma.04g008300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTTATAAATGCAGAGAGAGGGAATTCATGTGTGGTGGAAAGGTTGCTTGGCGGGGATAAGATTAAAGATTCAACAATGGCCTCTGCTTCTGCTACTCTTCTCAAGTCATCTCCTGTTCTTGACAAGTGCGAGTGGGTCAAAGGCCAGACCCTTCGCCAACCTCTCGTGAGATGTAACCCTTCCTCAGCATCAGCTCTCACCATCAAAGCTGCTTCCTATGCTGACGAGCTCGTCAAAACCGCCGTATGTTATTAGCCTATTTATACTACTAACAACCATAATTAAATGCCAAGGGTGTCTATAACTCAATTGGTTAAGTTATTGTAAATCTATTAATGAAATTCAATTTAGTTCCACTAATTTGTAATATGGTTTGATTATGTGAGTGCAGAAAACAGTGGCCTCACCGGGGCGTGGTATTTTGGCGATGGATGAGTCAAATGCAACCTGCGGGAAGCGTTTGGCATCTATTGGGTTAGAGAACACAGAAGCTAATCGGCAGGCATACCGTACCCTACTTGTGACAGTACCTGGTCTTGGTGAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACTGTCGATGGAAGGAAGATCGTCGACGTACTTGTTGACCAAAACATTGTTCCCGGTATCAAGGTCGACAAGGGTTTGGTGCCCCTAGCTGGTTCGAACGATGAGTCATGGTGCCAAGGTCTTGATGGTCTTGCGTCTCGCTCAGCTGCATACTACCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTCTGGCAGTGAAGGAAGCTGCCTGGGGTCTAGCTCGCTATGCTGCAATTTCACAGGAGAACGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGTGAGCATGGGATTGACAGGACATTCGAAGTAGCCCAAAAGGTGTGGTCAGAGGTATTCTTCTACCTGGCTGAGAACAATGTCCTGTTGGAAGGTATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCCGAGTCCAAGGACAAGGCCACTCCTCTGCAAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATCCCACCTGCTGTCCCTGGAATCATGTTTCTGTCTGGCGGACAATCTGAGGTTGAAGCAACCTTGAACTTGAATGCTATGAACCAGTCTCCAAACCCATGGCACGTGTCCTTCTCCTACGCCAGAGCTCTCCAAAACACCTGCTTGAAGACATGGGGTGGACTCCCTGAGAACGTGAAGGCTGCTCAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCACTCGCTCAGCTTGGAAAGTACACTGCCGAGGGTGAATCTGAGGAAGCCACTCGGGGAATGTTCGTCAAAGGTTACTCCTACTAAGATCATCTTGCCACACATGCTACAGTAACCCAAGGATCCAACATTAATTTGTCTAAATTGTGTTTGTGGTTTATATAGTCTTGGACACTATTTTTAATGATGATTATTACTTGTACCTTTTCTACTTAATGAACTTCTAGCCAATCAATTACGAATCTTGGACTTCAACGTGCACCATCATGTTCGAAACTCTTGGAACTTTGATAAAAAGAAAATTTTGATTACTCACCCC

>Glyma.04g008300.3 sequence-type=transcript locus=Glyma.04g008300 ID=Glyma.04g008300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTTATAAATGCAGAGAGAGGGAATTCATGTGTGGTGGAAAGGTTGCTTGGCGGGGATAAGATTAAAGATTCAACAATGGCCTCTGCTTCTGCTACTCTTCTCAAGTCATCTCCTGTTCTTGACAAGTGCGAGTGGGTCAAAGGCCAGACCCTTCGCCAACCTCTCGTGAGATGTAACCCTTCCTCAGCATCAGCTCTCACCATCAAAGCTGCTTCCTATGCTGACGAGCTCGTCAAAACCGCCAAAACAGTGGCCTCACCGGGGCGTGGTATTTTGGCGATGGATGAGTCAAATGCAACCTGCGGGAAGCGTTTGGCATCTATTGGGTTAGAGAACACAGAAGCTAATCGGCAGGCATACCGTACCCTACTTGTGACAGTACCTGGTCTTGGTGAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACTGTCGATGGAAGGAAGATCGTCGACGTACTTGTTGACCAAAACATTGTTCCCGGTATCAAGGTCGACAAGGGTTTGGTGCCCCTAGCTGGTTCGAACGATGAGTCATGGTGCCAAGGTCTTGATGGTCTTGCGTCTCGCTCAGCTGCATACTACCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTCTGGCAGTGAAGGAAGCTGCCTGGGGTCTAGCTCGCTATGCTGCAATTTCACAGGAGAACGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGTGAGCATGGGATTGACAGGACATTCGAAGTAGCCCAAAAGGTGTGGTCAGAGGTATTCTTCTACCTGGCTGAGAACAATGTCCTGTTGGAAGGTATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCCGAGTCCAAGGACAAGGCCACTCCTCTGCAAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATCCCACCTGCTGTCCCTGGAATCATGGTACGTAAGACATTCCTTGTTACTGCAAACAAACAATTAACCATGGTAATGACCAAAGTTGTTGTGTTGTGCAGTTTCTGTCTGGCGGACAATCTGAGGTTGAAGCAACCTTGAACTTGAATGCTATGAACCAGTCTCCAAACCCATGGCACGTGTCCTTCTCCTACGCCAGAGCTCTCCAAAACACCTGCTTGAAGACATGGGGTGGACTCCCTGAGAACGTGAAGGCTGCTCAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCACTCGCTCAGCTTGGAAAGTACACTGCCGAGGGTGAATCTGAGGAAGCCACTCGGGGAATGTTCGTCAAAGGTTACTCCTACTAAGATCATCTTGCCACACATGCTACAGTAACCCAAGGATCCAACATTAATTTGTCTAAATTGTGTTTGTGGTTTATATAGTCTTGGACACTATTTTTAATGATGATTATTACTTGTACCTTTTCTACTTAATGAACTTCTAGCCAATCAATTACGAATCTTGGACTTCAACGTGCACCATCATGTTCGAAACTCTTGGAACTTTGATAAAAAGAAAATTTTGATTACTCACCCC
Coding sequences of Glyma.04g008300
>Glyma.04g008300.1 sequence-type=CDS polypeptide=Glyma.04g008300.1.p locus=Glyma.04g008300 ID=Glyma.04g008300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCTGCTTCTGCTACTCTTCTCAAGTCATCTCCTGTTCTTGACAAGTGCGAGTGGGTCAAAGGCCAGACCCTTCGCCAACCTCTCGTGAGATGTAACCCTTCCTCAGCATCAGCTCTCACCATCAAAGCTGCTTCCTATGCTGACGAGCTCGTCAAAACCGCCAAAACAGTGGCCTCACCGGGGCGTGGTATTTTGGCGATGGATGAGTCAAATGCAACCTGCGGGAAGCGTTTGGCATCTATTGGGTTAGAGAACACAGAAGCTAATCGGCAGGCATACCGTACCCTACTTGTGACAGTACCTGGTCTTGGTGAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACTGTCGATGGAAGGAAGATCGTCGACGTACTTGTTGACCAAAACATTGTTCCCGGTATCAAGGTCGACAAGGGTTTGGTGCCCCTAGCTGGTTCGAACGATGAGTCATGGTGCCAAGGTCTTGATGGTCTTGCGTCTCGCTCAGCTGCATACTACCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTCTGGCAGTGAAGGAAGCTGCCTGGGGTCTAGCTCGCTATGCTGCAATTTCACAGGAGAACGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGTGAGCATGGGATTGACAGGACATTCGAAGTAGCCCAAAAGGTGTGGTCAGAGGTATTCTTCTACCTGGCTGAGAACAATGTCCTGTTGGAAGGTATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCCGAGTCCAAGGACAAGGCCACTCCTCTGCAAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATCCCACCTGCTGTCCCTGGAATCATGTTTCTGTCTGGCGGACAATCTGAGGTTGAAGCAACCTTGAACTTGAATGCTATGAACCAGTCTCCAAACCCATGGCACGTGTCCTTCTCCTACGCCAGAGCTCTCCAAAACACCTGCTTGAAGACATGGGGTGGACTCCCTGAGAACGTGAAGGCTGCTCAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCACTCGCTCAGCTTGGAAAGTACACTGCCGAGGGTGAATCTGAGGAAGCCACTCGGGGAATGTTCGTCAAAGGTTACTCCTACTAA

>Glyma.04g008300.2 sequence-type=CDS polypeptide=Glyma.04g008300.2.p locus=Glyma.04g008300 ID=Glyma.04g008300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGAGTCAAATGCAACCTGCGGGAAGCGTTTGGCATCTATTGGGTTAGAGAACACAGAAGCTAATCGGCAGGCATACCGTACCCTACTTGTGACAGTACCTGGTCTTGGTGAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACTGTCGATGGAAGGAAGATCGTCGACGTACTTGTTGACCAAAACATTGTTCCCGGTATCAAGGTCGACAAGGGTTTGGTGCCCCTAGCTGGTTCGAACGATGAGTCATGGTGCCAAGGTCTTGATGGTCTTGCGTCTCGCTCAGCTGCATACTACCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTCTGGCAGTGAAGGAAGCTGCCTGGGGTCTAGCTCGCTATGCTGCAATTTCACAGGAGAACGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGTGAGCATGGGATTGACAGGACATTCGAAGTAGCCCAAAAGGTGTGGTCAGAGGTATTCTTCTACCTGGCTGAGAACAATGTCCTGTTGGAAGGTATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCCGAGTCCAAGGACAAGGCCACTCCTCTGCAAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATCCCACCTGCTGTCCCTGGAATCATGTTTCTGTCTGGCGGACAATCTGAGGTTGAAGCAACCTTGAACTTGAATGCTATGAACCAGTCTCCAAACCCATGGCACGTGTCCTTCTCCTACGCCAGAGCTCTCCAAAACACCTGCTTGAAGACATGGGGTGGACTCCCTGAGAACGTGAAGGCTGCTCAAGATGCACTCCTTTTCCGTGCCAAGTCCAACTCACTCGCTCAGCTTGGAAAGTACACTGCCGAGGGTGAATCTGAGGAAGCCACTCGGGGAATGTTCGTCAAAGGTTACTCCTACTAA

>Glyma.04g008300.3 sequence-type=CDS polypeptide=Glyma.04g008300.3.p locus=Glyma.04g008300 ID=Glyma.04g008300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCTGCTTCTGCTACTCTTCTCAAGTCATCTCCTGTTCTTGACAAGTGCGAGTGGGTCAAAGGCCAGACCCTTCGCCAACCTCTCGTGAGATGTAACCCTTCCTCAGCATCAGCTCTCACCATCAAAGCTGCTTCCTATGCTGACGAGCTCGTCAAAACCGCCAAAACAGTGGCCTCACCGGGGCGTGGTATTTTGGCGATGGATGAGTCAAATGCAACCTGCGGGAAGCGTTTGGCATCTATTGGGTTAGAGAACACAGAAGCTAATCGGCAGGCATACCGTACCCTACTTGTGACAGTACCTGGTCTTGGTGAATACATCTCTGGTGCCATTCTCTTTGAGGAAACTCTCTACCAATCCACTGTCGATGGAAGGAAGATCGTCGACGTACTTGTTGACCAAAACATTGTTCCCGGTATCAAGGTCGACAAGGGTTTGGTGCCCCTAGCTGGTTCGAACGATGAGTCATGGTGCCAAGGTCTTGATGGTCTTGCGTCTCGCTCAGCTGCATACTACCAGCAAGGTGCCCGTTTCGCCAAATGGCGTACTGTTGTGAGCATCCCCAACGGTCCCTCTGCTCTGGCAGTGAAGGAAGCTGCCTGGGGTCTAGCTCGCTATGCTGCAATTTCACAGGAGAACGGGTTGGTCCCAATTGTGGAGCCAGAGATCTTGCTTGATGGTGAGCATGGGATTGACAGGACATTCGAAGTAGCCCAAAAGGTGTGGTCAGAGGTATTCTTCTACCTGGCTGAGAACAATGTCCTGTTGGAAGGTATTCTCCTCAAGCCTAGCATGGTTACTCCAGGAGCCGAGTCCAAGGACAAGGCCACTCCTCTGCAAGTTGCTGATTACACCCTCAAGCTCCTTCACAGGAGAATCCCACCTGCTGTCCCTGGAATCATGGTACGTAAGACATTCCTTGTTACTGCAAACAAACAATTAACCATGGTAATGACCAAAGTTGTTGTGTTGTGCAGTTTCTGTCTGGCGGACAATCTGAGGTTGAAGCAACCTTGA
Predicted protein sequences of Glyma.04g008300
>Glyma.04g008300.1.p sequence-type=predicted peptide transcript=Glyma.04g008300.1 locus=Glyma.04g008300 ID=Glyma.04g008300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASASATLLKSSPVLDKCEWVKGQTLRQPLVRCNPSSASALTIKAASYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGEYISGAILFEETLYQSTVDGRKIVDVLVDQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQENGLVPIVEPEILLDGEHGIDRTFEVAQKVWSEVFFYLAENNVLLEGILLKPSMVTPGAESKDKATPLQVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWGGLPENVKAAQDALLFRAKSNSLAQLGKYTAEGESEEATRGMFVKGYSY*

>Glyma.04g008300.2.p sequence-type=predicted peptide transcript=Glyma.04g008300.2 locus=Glyma.04g008300 ID=Glyma.04g008300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGEYISGAILFEETLYQSTVDGRKIVDVLVDQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQENGLVPIVEPEILLDGEHGIDRTFEVAQKVWSEVFFYLAENNVLLEGILLKPSMVTPGAESKDKATPLQVADYTLKLLHRRIPPAVPGIMFLSGGQSEVEATLNLNAMNQSPNPWHVSFSYARALQNTCLKTWGGLPENVKAAQDALLFRAKSNSLAQLGKYTAEGESEEATRGMFVKGYSY*

>Glyma.04g008300.3.p sequence-type=predicted peptide transcript=Glyma.04g008300.3 locus=Glyma.04g008300 ID=Glyma.04g008300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASASATLLKSSPVLDKCEWVKGQTLRQPLVRCNPSSASALTIKAASYADELVKTAKTVASPGRGILAMDESNATCGKRLASIGLENTEANRQAYRTLLVTVPGLGEYISGAILFEETLYQSTVDGRKIVDVLVDQNIVPGIKVDKGLVPLAGSNDESWCQGLDGLASRSAAYYQQGARFAKWRTVVSIPNGPSALAVKEAAWGLARYAAISQENGLVPIVEPEILLDGEHGIDRTFEVAQKVWSEVFFYLAENNVLLEGILLKPSMVTPGAESKDKATPLQVADYTLKLLHRRIPPAVPGIMVRKTFLVTANKQLTMVMTKVVVLCSFCLADNLRLKQP*






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