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Report for Sequence Feature Glyma.04g007300

Feature Type:gene_model
Chromosome:Gm04
Start:564065
stop:566082
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g007300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G16570.1AT GLN phosphoribosyl pyrophosphate amidotransferase 1 JGI N/AIEA
GO:0006164GO-bp purine nucleotide biosynthetic process EnsemblGenomesN/AIEA
GO:0006189GO-bp 'de novo' IMP biosynthetic process EnsemblGenomesN/AIEA
GO:0006541GO-bp glutamine metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0009113GO-bp purine nucleobase biosynthetic process EnsemblGenomesN/AIEA
GO:0009116GO-bp nucleoside metabolic process EnsemblGenomesN/AIEA
GO:0009116GO-bp nucleoside metabolic process JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0004044GO-mf amidophosphoribosyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051539GO-mf 4 iron, 4 sulfur cluster binding EnsemblGenomesN/AIEA
KOG0572 KOG Glutamine phosphoribosylpyrophosphate amidotransferase JGI N/AIEA
PTHR11907Panther AMIDOPHOSPHORIBOSYLTRANSFERASE JGI N/AIEA
PF00156PFAM Phosphoribosyl transferase domain JGI N/AIEA
PF00310PFAM Glutamine amidotransferases class-II JGI N/AIEA
PWY-6121SoyCyc9 5-aminoimidazole ribonucleotide biosynthesis I Plant Metabolic Network ISS
PWY-841SoyCyc9 superpathway of purine nucleotides de novo biosynthesis I Plant Metabolic Network ISS
GN7V-44216SoyCyc9-rxn amidophosphoribosyltransferase Plant Metabolic Network ISS

Proteins Associated with Glyma.04g007300
LocusGene SymbolProtein Name
PUR1 glutamine phosphoribosylpyrophosphate amidotransferase

Expression Patterns of Glyma.04g007300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g007300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g00930 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g007300
>Glyma.04g007300.1 sequence-type=CDS polypeptide=Glyma.04g007300.1.p locus=Glyma.04g007300 ID=Glyma.04g007300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTGCGTCTAATCTCTCCACTCTCTCCTCCTCTTCCCTCTCCAAACCCTCGTCCTCTTTCCCTTTCCGCAACACACCAACAAACAACAACGCTTCTTTTCTCCACAACAAATCCCTTCCAAACCAAAACTCTCTCTCTCACAAACTCTCTTCCCCTCTGCCTCTCGCATGCAACCCAAAAAACCAAAACACTTGTGTCTTCTTCGACGACGAAGACCAAAAGCCCCGTGAAGAGTGCGGCGTGGTGGGCATCTACGGCGACCCGGAAGCCTCCCGTCTCTGCTCCCTGGCCCTCCACGCCCTCCAGCACCGCGGCCAAGAAGGTGCCGGCATCGTAGCCGTCCACGACAACCACCTCCAATCCGTCACCGGCGTCGGCCTCGTCTCCGACGTCTTCGACGAGTCCAAGCTCTCCCGCCTCCCCGGCACCTCGGCCATTGGCCACGTCCGCTACTCCACCGCCGGCCAATCCATGCTCAAAAACGTCCAACCCTTCCTGGCCGACTACCGCTTCGGCTCCGTCGCCGTCGCTCACAACGGCAACTTCGTCAACTACCGCTCCCTCCGAGCCAGACTCGAACACAACAACGGCTCCATCTTCAACACCACCTCCGACACCGAGGTTGTCCTCCACCTCATCGCCACTTCAAAACACAGGCCATTCCTCCTCAGAATCGTGGACGCCTGCGAGCATCTCCAAGGCGCCTACTCCCTCGTATTCGTCACGGAGGACAAGCTCGTCGCCGTCAGAGACCCCTTCGGGTTCCGACCCTTGGTGATGGGTAGGAGAACCAACGGCGCTGTAGTTTTGGCCTCCGAGACATGCGCGCTTGATTTAATCGAAGCCACGTACGAGAGAGAGGTGTACCCGGGTGAAGTTATCGTGGTGGACCACACTGGAATCCAATCCCTCTGCCTCGTGTCTCATCCTGAGCCAAAACAATGCATCTTCGAGCACATATACTTCGCGCTTCCTAACTCTGTTGTTTTCGGGAGGTCCGTGTACGAGTCTAGAAAAAAATTCGGAGAAATACTAGCCTCTGAGAGTCCCGTTGAGTGTGACGTTGTGATCGCGGTTCCTGATTCTGGCGTTGTGGCTGCGCTTGGTTATGCTGCAAAAGCTGGGGTACCCTTTCAGCAGGGGTTGATTAGGTCCCACTATGTAGGGAGGACTTTCATCGAGCCTTCGCAGAAAATTAGGGATTTTGGAGTGAAGCTTAAACTGTCTCCGGTTCATGCTGTGCTTGAAGGGAAGAGGGTTGTGGTTGTGGATGATTCCATCGTGAGAGGCACCACGTCGTCCAAGATTGTGAGGCTCTTGAAGGAGGCCGGTGCCAAGGAAGTTCACATGAGGATTGCATGTCCTCCTATTGTTGCTTCGTGTTATTATGGAGTTGACACACCCAGTTCAGAGGAGTTGATATCCAACCGGATGAGTGTGGAGGAGATAAGGAAGTTTATTGGGTCGGATTCGCTGGCTTTTCTTCCCTTGGATAAGTTGAAGACATTGTTAGGGGATGATGCTCTTAACTACTGCTATGCTTGCTTCTCTGGGAAGTACCCTGTTGAGCCTGAGGAACTTCAAATGAAGAGGCTTGGTGTTGCTCACTTCAATTGGGACGACGACTTCAATGGGAATTTCGAATCTATTGATGTGGGGGGTTGGGTTACAAATCAAGATGGGTTTAAGATTGGTAGTGTCTAA
Predicted protein sequences of Glyma.04g007300
>Glyma.04g007300.1.p sequence-type=predicted peptide transcript=Glyma.04g007300.1 locus=Glyma.04g007300 ID=Glyma.04g007300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAASNLSTLSSSSLSKPSSSFPFRNTPTNNNASFLHNKSLPNQNSLSHKLSSPLPLACNPKNQNTCVFFDDEDQKPREECGVVGIYGDPEASRLCSLALHALQHRGQEGAGIVAVHDNHLQSVTGVGLVSDVFDESKLSRLPGTSAIGHVRYSTAGQSMLKNVQPFLADYRFGSVAVAHNGNFVNYRSLRARLEHNNGSIFNTTSDTEVVLHLIATSKHRPFLLRIVDACEHLQGAYSLVFVTEDKLVAVRDPFGFRPLVMGRRTNGAVVLASETCALDLIEATYEREVYPGEVIVVDHTGIQSLCLVSHPEPKQCIFEHIYFALPNSVVFGRSVYESRKKFGEILASESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVHAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIVASCYYGVDTPSSEELISNRMSVEEIRKFIGSDSLAFLPLDKLKTLLGDDALNYCYACFSGKYPVEPEELQMKRLGVAHFNWDDDFNGNFESIDVGGWVTNQDGFKIGSV*






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