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Report for Sequence Feature Glyma.04g006000

Feature Type:gene_model
Chromosome:Gm04
Start:474479
stop:476934
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g006000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34840.1AT Phosphorylase superfamily protein JGI N/AIEA
GO:0009116GO-bp nucleoside metabolic process EnsemblGenomesN/AIEA
GO:0009116GO-bp nucleoside metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
PTHR21234Panther PURINE NUCLEOSIDE PHOSPHORYLASE JGI N/AIEA
PTHR21234:SF5Panther JGI N/AIEA
PF01048PFAM Phosphorylase superfamily JGI N/AIEA
PWY-6754SoyCyc9 S-methyl-5'-thioadenosine degradation I Plant Metabolic Network ISS
PWY-7270SoyCyc9 L-methionine salvage cycle II (plants) Plant Metabolic Network ISS
PWY-7528SoyCyc9 L-methionine salvage cycle I (bacteria and plants) Plant Metabolic Network ISS
GN7V-53658SoyCyc9-rxn methylthioadenosine nucleosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g006000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g006000 not represented in the dataset
Glyma.04g006000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g006000
ParalogEvidenceComments
Glyma.06g005700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g006000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g00785 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g006000
>Glyma.04g006000.1 sequence-type=CDS polypeptide=Glyma.04g006000.1.p locus=Glyma.04g006000 ID=Glyma.04g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTGGATTTGGGCTGGGAATGATCCAACTTTGGGGGTTGATAGTATAGGCACGATACCATCTGCTCTTGCAACATATGCTGCTGTTCTAGCATTACAACCATACTTGATCATCAATGCAGGCACCGCTGGTGGCTTCAAGATTTTTGATCTGTATGGAATTGGTTTACGTAAAGTCTTTGAAACACCCAACCTTGTAAAGGAGCTTAATCTAAAGGAGTTCATTGTCTTTGTGCAAAACTTGAATGTTAAACAATATTTATGCATATTTCTGGTGGCTAAATTGTCTACTGGTGGCTCTTTAGATATGACAGAGCAGGATGAATCATCAATAATTGCAAATGATGCCACAGTTATAGATATGGAGGGAGCTGCTATTGCATATGTTGCCGACATACTAAAAGTTCCTGCAATTTTTATAAAAGCTGTGAATAGTATCGTTGATGGTGACAAAGCAATTGTAGAAGAATTCCTGCAGAATTTGGAAGCTCTAACTGCTGTTCTTGATCTGAACAAGTTATTAATTTTATTAATGGAAAGTGCATATCTGAACTTTGACAACTCAATTTCACCTTATCCTCTAGTAGAAGAATATATTTCTACAGGGAGAACTGCGAATGCCTTTACCTGA
Predicted protein sequences of Glyma.04g006000
>Glyma.04g006000.1.p sequence-type=predicted peptide transcript=Glyma.04g006000.1 locus=Glyma.04g006000 ID=Glyma.04g006000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNWIWAGNDPTLGVDSIGTIPSALATYAAVLALQPYLIINAGTAGGFKIFDLYGIGLRKVFETPNLVKELNLKEFIVFVQNLNVKQYLCIFLVAKLSTGGSLDMTEQDESSIIANDATVIDMEGAAIAYVADILKVPAIFIKAVNSIVDGDKAIVEEFLQNLEALTAVLDLNKLLILLMESAYLNFDNSISPYPLVEEYISTGRTANAFT*






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