Glyma.04g005900

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Report for Sequence Feature Glyma.04g005900

Feature Type:	gene_model
Chromosome:	Gm04
Start:	468859
stop:	472908
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g005900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G34840.1	AT	Phosphorylase superfamily protein	JGI	N/A	IEA
AT4G38800.1	AT	methylthioadenosine nucleosidase 1	JGI	N/A	IEA
GO:0009116	GO-bp	nucleoside metabolic process	EnsemblGenomes	N/A	IEA
GO:0009116	GO-bp	nucleoside metabolic process	JGI	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	JGI	N/A	IEA
PTHR21234	Panther	PURINE NUCLEOSIDE PHOSPHORYLASE	JGI	N/A	IEA
PTHR21234:SF5	Panther		JGI	N/A	IEA
PF01048	PFAM	Phosphorylase superfamily	JGI	N/A	IEA
PWY-6754	SoyCyc9	S-methyl-5'-thioadenosine degradation I	Plant Metabolic Network		ISS
PWY-7270	SoyCyc9	L-methionine salvage cycle II (plants)	Plant Metabolic Network		ISS
PWY-7528	SoyCyc9	L-methionine salvage cycle I (bacteria and plants)	Plant Metabolic Network		ISS
GN7V-59527	SoyCyc9-rxn	methylthioadenosine nucleosidase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g005900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g005900 not represented in the dataset	Glyma.04g005900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g005900

Paralog	Evidence	Comments
Glyma.06g005600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g005900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g00770	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g005900

Limit To All Plant Sequences

>Glyma.04g005900.2 sequence-type=transcript locus=Glyma.04g005900 ID=Glyma.04g005900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTTGTGGGGAAAAAAGATAGAAGAGGAAAAGTCATAAAAAGCATAAGAATCTGCAACAAATAGTCATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTTTTTGATCTGTATGGAGTTGGTTTACGTAAAGCCTTTGTAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAATGATGCCACAGTTAAAGATATGGAGCTATTGCTTATGTTTCTGACCTTCTGAAAGTTCCTGCAATATTTGTAAAAGCTGTGACTGATATCATTGATGGTGACAAACCAACTGCAGAAGAATTCCTGCAAAATTTGGCAGCTGTAACTACTGCACTTGATCTGGCAGTTGAACAAGTTATTAATTTTATTAATGGAAAGTGCGAATCTGAACTTTGACAACCCAATTTCACCTTCCAGAGTTTTTTTTTGTATGCAATGTTACACGGTGGGCTCCAATTGTACACTACTACCATTATTTGGTTGGGAATTTGTGAGATTTAAGTAAAAATACAAACTTATAAACTGAAGATATTGCAGCCCCACCTCCCATCTCTCTTTTGTACTGTTCTGGCCCTGCAGGCTGTATAAGTTATCTGGCAAAGATTGTGGCAATCATTGTAAACATGTACGATGACATACTTTAGTGAATCACATGTAGCATATGGATGATTATTTGTCTCTGAAATTTTCCATGATGATGGAATGATTGAGTAAGTTGATTTTAATAATGGAAGGCCCCTAATTCATGGTTGTTTCTGTTTGTTTGGAATTT

>Glyma.04g005900.3 sequence-type=transcript locus=Glyma.04g005900 ID=Glyma.04g005900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTTGTGGGGAAAAAAGATAGAAGAGGAAAAGTCATAAAAAGCATAAGAATCTGCAACAAATAGTCATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTTTTTGATCTGTATGGAGTTGGTTTACGTAAAGCCTTTGTAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAATGATGCCACAGTTAAAGATATGGAGGCTTAACTCCCCGTTTCAACTTTTTTCTCTAGGGAGCAGCTATTGCTTATGTTTCTGACCTTCTGAAAGTTCCTGCAATATTTGTAAAAGCTGTGACTGATATCATTGATGGTGACAAACCAACTGCAGAAGAATTCCTGCAAAATTTGGCAGCTGTAACTACTGCACTTGATCTGGCAGTTGAACAAGTTATTAATTTTATTAATGGAAAGTGCGAATCTGAACTTTGACAACCCAATTTCACCTTCCAGAGTTTTTTTTTGTATGCAATGTTACACGGTGGGCTCCAATTGTACACTACTACCATTATTTGGTTGGGAATTTGTGAGATTTAAGTAAAAATACAAACTTATAAACTGAAGATATTGCAGCCCCACCTCCCATCTCTCTTTTGTACTGTTCTGGCCCTGCAGGCTGTATAAGTTATCTGGCAAAGATTGTGGCAATCATTGTAAACATGTACGATGACATACTTTAGTGAATCACATGTAGCATATGGATGATTATTTGTCTCTGAAATTTTCCATGATGATGGAATGATTGAGTAAGTTGATTTTAATAATGGAAGGCCCCTAATTCATGGTTGTTTCTGTTTGTTTGGAATTT

>Glyma.04g005900.4 sequence-type=transcript locus=Glyma.04g005900 ID=Glyma.04g005900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACGTTGTGGGGAAAAAAGATAGAAGAGGAAAAGTCATAAAAAGCATAAGAATCTGCAACAAATAGTCATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTAAGTGTGGTGTTATTTCTCTAGTTTGGGCTTGTTCTACCTCTGTAGGATACTTTGTTTTTTTTATATGTGTCTCTTCTTTCCTTCCAATAATATTATTTTATCCAAGAAAAAGAATTATAACAATTTCAGCATGACATAGCTGATACCACATTGCTCTAGTTTCTCATTTAACCATCAAAGAAAAAAGACAGAAAGAGTGAGGTGGTTGACCTGTCAAATCATTAATGTTGGCTTTCTTTTAAATTTTTCAATTGGCCCAGTTAAGAATCTACCGAACTTTTTAATAAGCCTCCATGCTTAAATATAGTGAGGTAGAAGTTTTGCCACCAACATCAATATACACTTGTAATGTCTTTTGCAGGTTTTTGATCTGTATGGAGTTGGTTTACGTAAAGCCTTTGTAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAATGATGCCACAGTTAAAGATATGGAGGGAGCAGCTATTGCTTATGTTTCTGACCTTCTGAAAGTTCCTGCAATATTTGTAAAAGCTGTGACTGATATCATTGATGGTGACAAACCAACTGCAGAAGAATTCCTGCAAAATTTGGCAGCTGTAACTACTGCACTTGATCTGGCAGTTGAACAAGTTATTAATTTTATTAATGGAAAGTGCGAATCTGAACTTTGACAACCCAATTTCACCTTCCAGAGTTTTTTTTTGTATGCAATGTTACACGGTGGGCTCCAATTGTACACTACTACCATTATTTGGTTGGGAATTTGTGAGATTTAAGTAAAAATACAAACTTATAAACTGAAGATATTGCAGCCCCACCTCCCATCTCTCTTTTGTACTGTTCTGGCCCTGCAGGCTGTATAAGTTATCTGGCAAAGATTGTGGCAATCATTGTAAACATGTACGATGACATACTTTAGTGAATCACATGTAGCATATGGATGATTATTTGTCTCTGAAATTTTCCATGATGATGGAATGATTGAGTAAGTTGATTTTAATAATGGAAGGCCCCTAATTCATGGTTGTTTCTGTTTGTTTGGAATTT

Coding sequences of Glyma.04g005900

Limit To All Plant Sequences

>Glyma.04g005900.1 sequence-type=CDS polypeptide=Glyma.04g005900.1.p locus=Glyma.04g005900 ID=Glyma.04g005900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTTTTTGATCTGTATGGAGTTGGTTTACGTAAAGCCTTTGTAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAATGATGCCACAGTTAAAGATATGGAGGGAGCAGCTATTGCTTATGTTTCTGACCTTCTGAAAGTTCCTGCAATATTTGTAAAAGCTGTGACTGATATCATTGATGGTGACAAACCAACTGCAGAAGAATTCCTGCAAAATTTGGCAGCTGTAACTACTGCACTTGATCTGGCAGTTGAACAAGTTATTAATTTTATTAATGGAAAGTGCGAATCTGAACTTTGA

>Glyma.04g005900.2 sequence-type=CDS polypeptide=Glyma.04g005900.2.p locus=Glyma.04g005900 ID=Glyma.04g005900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTTTTTGATCTGTATGGAGTTGGTTTACGTAAAGCCTTTGTAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAATGATGCCACAGTTAAAGATATGGAGCTATTGCTTATGTTTCTGACCTTCTGA

>Glyma.04g005900.3 sequence-type=CDS polypeptide=Glyma.04g005900.3.p locus=Glyma.04g005900 ID=Glyma.04g005900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTTTTTGATCTGTATGGAGTTGGTTTACGTAAAGCCTTTGTAGCACCCAACCTTGTAAAGGAGCTTAATCTAAAGGTGGGTAAATTGTCTACTGGTGACTCTTTAGATATGACACAGCAGGATGAATCGTCAATCATTGCAAATGATGCCACAGTTAAAGATATGGAGGCTTAA

>Glyma.04g005900.4 sequence-type=CDS polypeptide=Glyma.04g005900.4.p locus=Glyma.04g005900 ID=Glyma.04g005900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCGCTTGGGGACCAATCAGAGGAACAAGCCATGGCTGCCCAACCTAAACCTCAGAACCGACCCATTTCTAACATCGTCATCGTCGTTGCTATGCAGACGGAGGCACTTCCCATTGTTAACAGATTCCAGCTCACTGAGGACCCTGACACCCCGTTTCCGCAAGGGGTTCCTTGGGTCCGTTATCAGGGGACATACAAAGATCTTAATATAAGCTTGATTTGGCCGGGAAAAGATCCAACTTTGGGGGTTGATAGTGTAGGCACGATATCATCTGCTCTTGTAACGTATGCTGCTATTCAAGCATTACAACCAGACTTGATCATCAATGCAGGCACTGCTGGTGGCTTCAAGGCCAAAGGAGCTAGTATTGGTGATGTTTTCATTGTATCAGATTGTGCTTTTCACGACAGAAGAATACCCATACCTGTAAGTGTGGTGTTATTTCTCTAG

Predicted protein sequences of Glyma.04g005900

Limit To All Plant Sequences

>Glyma.04g005900.1.p sequence-type=predicted peptide transcript=Glyma.04g005900.1 locus=Glyma.04g005900 ID=Glyma.04g005900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAALGDQSEEQAMAAQPKPQNRPISNIVIVVAMQTEALPIVNRFQLTEDPDTPFPQGVPWVRYQGTYKDLNISLIWPGKDPTLGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDVFIVSDCAFHDRRIPIPVFDLYGVGLRKAFVAPNLVKELNLKVGKLSTGDSLDMTQQDESSIIANDATVKDMEGAAIAYVSDLLKVPAIFVKAVTDIIDGDKPTAEEFLQNLAAVTTALDLAVEQVINFINGKCESEL*

>Glyma.04g005900.2.p sequence-type=predicted peptide transcript=Glyma.04g005900.2 locus=Glyma.04g005900 ID=Glyma.04g005900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAALGDQSEEQAMAAQPKPQNRPISNIVIVVAMQTEALPIVNRFQLTEDPDTPFPQGVPWVRYQGTYKDLNISLIWPGKDPTLGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDVFIVSDCAFHDRRIPIPVFDLYGVGLRKAFVAPNLVKELNLKVGKLSTGDSLDMTQQDESSIIANDATVKDMELLLMFLTF*

>Glyma.04g005900.3.p sequence-type=predicted peptide transcript=Glyma.04g005900.3 locus=Glyma.04g005900 ID=Glyma.04g005900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAALGDQSEEQAMAAQPKPQNRPISNIVIVVAMQTEALPIVNRFQLTEDPDTPFPQGVPWVRYQGTYKDLNISLIWPGKDPTLGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDVFIVSDCAFHDRRIPIPVFDLYGVGLRKAFVAPNLVKELNLKVGKLSTGDSLDMTQQDESSIIANDATVKDMEA*

>Glyma.04g005900.4.p sequence-type=predicted peptide transcript=Glyma.04g005900.4 locus=Glyma.04g005900 ID=Glyma.04g005900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAALGDQSEEQAMAAQPKPQNRPISNIVIVVAMQTEALPIVNRFQLTEDPDTPFPQGVPWVRYQGTYKDLNISLIWPGKDPTLGVDSVGTISSALVTYAAIQALQPDLIINAGTAGGFKAKGASIGDVFIVSDCAFHDRRIPIPVSVVLFL*

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