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Report for Sequence Feature Glyma.04g004900

Feature Type:gene_model
Chromosome:Gm04
Start:418344
stop:419841
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g004900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G21060.1AT glycine-rich protein 2B JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
KOG3070 KOG Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing JGI N/AIEA
PTHR11544Panther COLD SHOCK DOMAIN CONTAINING PROTEINS JGI N/AIEA
PTHR11544:SF12Panther PROTEIN CEY-1 JGI N/AIEA
PF00098PFAM Zinc knuckle JGI N/AIEA
PF00313PFAM 'Cold-shock' DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.04g004900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g004900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g00660 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g004900
>Glyma.04g004900.1 sequence-type=CDS polypeptide=Glyma.04g004900.1.p locus=Glyma.04g004900 ID=Glyma.04g004900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAGAGTGAGAAGCAGAGGGTAACGGGGAAGGTGAAGTGGTTCGATGACCAGAAGGGTTTTGGCTTCATAACCACCGACGACAGCGGCGAGGAATTCTTCGTCCACCAGTCCTCCATCCGATCCGACGGCTTCCGCAGCCTCGCCCTCGGCGAGTCCGTCGAGTTCCTTATTGACTCCGATCCCGAAGGCCGCACCAAGGCCGTCGACGTCACCGGCCCTGACGAATCGCCAGTCCAGGGCACCCGCGGTGGCGGAGGAGGAGGAAGAGGAAGCTATGGTGGAGGTGGCGGAAGAGGTGGCTATGGTGGTGGCGGACGCGGCGGAAGAGGTGGATATGGAGGAGGCGGCGGAGGCTATGGGGGAGGTGGCTATGGCGGAGGCGGTGGTTATGGTGGAGGTGGCGGCGGCGGCGGAGGGGGATGCTATAAGTGTGGCGAGACTGGTCACATAGCTAGGGACTGCAGCCAAGGTGGGGGTGGCGGTGGAAGGTACGGCGGTGGTGGGGGTGGCGGCGGAAGCTGCTACAACTGTGGGGAGTCCGGGCATTTTGCCAGGGACTGCCCTTCCAGTGCTCGTTGA
Predicted protein sequences of Glyma.04g004900
>Glyma.04g004900.1.p sequence-type=predicted peptide transcript=Glyma.04g004900.1 locus=Glyma.04g004900 ID=Glyma.04g004900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSESEKQRVTGKVKWFDDQKGFGFITTDDSGEEFFVHQSSIRSDGFRSLALGESVEFLIDSDPEGRTKAVDVTGPDESPVQGTRGGGGGGRGSYGGGGGRGGYGGGGRGGRGGYGGGGGGYGGGGYGGGGGYGGGGGGGGGGCYKCGETGHIARDCSQGGGGGGRYGGGGGGGGSCYNCGESGHFARDCPSSAR*






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