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Report for Sequence Feature Glyma.04g002200

Feature Type:gene_model
Chromosome:Gm04
Start:186700
stop:188558
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g002200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G44270.1AT repressor of lrx1 JGI N/AIEA
GO:0002098GO-bp tRNA wobble uridine modification EnsemblGenomesN/AIEA
GO:0008033GO-bp tRNA processing EnsemblGenomesN/AIEA
GO:0032447GO-bp protein urmylation EnsemblGenomesN/AIEA
GO:0034227GO-bp tRNA thio-modification EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0000049GO-mf tRNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity EnsemblGenomesN/AIEA
KOG2840 KOG Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily JGI N/AIEA
PTHR11807Panther ATPASES OF THE PP SUPERFAMILY-RELATED JGI N/AIEA
PTHR11807:SF3Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF01171PFAM PP-loop family JGI N/AIEA

Expression Patterns of Glyma.04g002200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g002200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g00350 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g002200
>Glyma.04g002200.2 sequence-type=transcript locus=Glyma.04g002200 ID=Glyma.04g002200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGGTGGAGAGGAGAAGTAAACCCTAGAGTAGAGAATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGATTATCCAATTTGCTTGCTTTCTTGTACTCGCTCACAAATTGCTGTGCTTATGTTTATTATACAATGCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGATTTCCCACATCACACCTATCAGCGAGACGAGGCTTCCTGTTCCTGAAATTCAGGGTTTAAAGAAAAGTTGCACTGTTTCCAGATTATTACTAGTCAATTTAATCATATATCTTTAGCTTTATTTCTGTGGGCAACGGTCATGTTGTCATTTGTACACCAAGTCGGCTTCTCATAATCAATGGATACTAATGCTCTGGTGGAGAGAAAGTGAGCGAAGAAAAAAAAAAATAGAAGGAAATAAATATTTGAAATTTTGTGGTTGAAAGTTAACCTTTCTTTTCTCACTTTTTTTCTAATCAAACAAAAGAAAATATTGTCATCCATATTTTCCTTTGTCTACTTGTTTCAGTAACACCCGAATTCTAAGTATTAGGAGAAGACTGCTTTTTAACACCAtgttatttatattatatttgttgattgattagagatactctaggtattgttgttgtggttattattgttaatgttattatagttattgatttatggttgttgtattATATGGAATAAAATTAAAATTTATGACATT

>Glyma.04g002200.3 sequence-type=transcript locus=Glyma.04g002200 ID=Glyma.04g002200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGGTGGAGAGGAGAAGTAAACCCTAGAGTAGAGAATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGATTTCCCACATCACACCTATCAGCGAGACGAGGCTTCCTGTTCCTGAAATTCAGGGTTTAAAGAAAAGTTGCACTGTTTCCAGATTATTACTAGTCAATTTAATCATATATCTTTAGCTTTATTTCTGTGGGCAACGGTCATGTTGTCATTTGTACACCAAGTCGGCTTCTCATAATCAATGGATACTAATGCTCTGGTGGAGAGAAAGTGAGCGAAGAAAAAAAAAAATAGAAGGAAATAAATATTTGAAATTTTGTGGTTGAAAGTTAACCTTTCTTTTCTCACTTTTTTTCTAATCAAACAAAAGAAAATATTGTCATCCATATTTTCCTTTGTCTACTTGTTTCAGTAACACCCGAATTCTAAGTATTAGGAGAAGACTGCTTTTTAACACCAtgttatttatattatatttgttgattgattagagatactctaggtattgttgttgtggttattattgttaatgttattatagttattgatttatggttgttgtattATATGGAATAAAATTAAAATTTATGACATT
Coding sequences of Glyma.04g002200
>Glyma.04g002200.1 sequence-type=CDS polypeptide=Glyma.04g002200.1.p locus=Glyma.04g002200 ID=Glyma.04g002200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGACCTAGGGCCATTCTGGACATCATCAAATCAGGGGAGAATTTCAGGATTTCTACTAGTACCAAGATGCCAGAGCAGGGAACATGCGAACGCTGCGGTTATATTTCTAGTCAGAAATGGTGTAAAGCTTGTGTTCTGCTTGATGGACTGAATAGAGGTTTGCCTAAACTGGGGATTGGACGAAGTCGTGGCAGTGTTGCTTCTGATAATGGAAATGAAAGTAAAGTAGAAAAGAGCATCCAGGGCAAACAATGTACAACTCTAGACTTCTGA

>Glyma.04g002200.2 sequence-type=CDS polypeptide=Glyma.04g002200.2.p locus=Glyma.04g002200 ID=Glyma.04g002200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCGATTACTTTTCCACCGAATGCATTTACTCTCCTAATGCATATCGAGGTTTTGCTCGCGAGTTCATCAAAGATTTGGAGAGAATCAGGTGCTGA

>Glyma.04g002200.3 sequence-type=CDS polypeptide=Glyma.04g002200.3.p locus=Glyma.04g002200 ID=Glyma.04g002200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTGAGGGTGGGGAGAGGAAAAGAGGCGCACGTTTATGCTGCGTGTGCAAGAAATCAAGAGCTTCGGTGAAGAGGCCGAAAACCCTAGAGCAGATATGCAGGGAGTGCTTCTACGATGCTTTTGAGTCTGAGATCCATCAGGTAATTCTTGAGAATCAGCTCTTCAGCCCTGGTGAACGCGTCGCAATCGGCGCTTCTGGCGGAAAGGATTCCACCGTCCTTGCCTACGTCCTCTCCAAGCTCAACCGCCTCCACAATTACGGCCTCCATCTCTTCCTCCTCTCCGTCGACGAGGGCATCACCGGCTACCGCGACGACTCTCTGGAAACTGTTCACCGGAACCAGATTCAGTACGGGCTCCCTCTCAAAGTTGTATCTTACAAGGACCTCTACGGATGGACTATGGACGAGATCGTGCGAGTGATTGGTTTGAAAAACAATTGCACTTTCTGCGGCGTCTTCCGTCGACAGGCCCTTGACCGAGGTGCTTCTCTCTTGAAAGTGGACAAAGTCGTTACTGGGCACAATGCCGATGATATTGCCGAGACCGTCCTCCTCAACCTCCTCCGAGGAGATGTTGCCAGATTGAGTAGATGCACCTCTATAACCACCGGTGAGGATGGCCCCATTCCCCGATGCAAACCTTTCAAGTATACTTACGAGAAGGAGATTGTCATGCATTTACTCTCCTAA
Predicted protein sequences of Glyma.04g002200
>Glyma.04g002200.1.p sequence-type=predicted peptide transcript=Glyma.04g002200.1 locus=Glyma.04g002200 ID=Glyma.04g002200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRPRAILDIIKSGENFRISTSTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGSVASDNGNESKVEKSIQGKQCTTLDF*

>Glyma.04g002200.2.p sequence-type=predicted peptide transcript=Glyma.04g002200.2 locus=Glyma.04g002200 ID=Glyma.04g002200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKKLDYFSTECIYSPNAYRGFAREFIKDLERIRC*

>Glyma.04g002200.3.p sequence-type=predicted peptide transcript=Glyma.04g002200.3 locus=Glyma.04g002200 ID=Glyma.04g002200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGEGGERKRGARLCCVCKKSRASVKRPKTLEQICRECFYDAFESEIHQVILENQLFSPGERVAIGASGGKDSTVLAYVLSKLNRLHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVRVIGLKNNCTFCGVFRRQALDRGASLLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMHLLS*






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