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Report for Sequence Feature Glyma.04g002000

Feature Type:gene_model
Chromosome:Gm04
Start:172803
stop:177893
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.04g002000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08540.1AT ABC1,ATSIG1,ATSIG2,SIG1,SIG2,SIGA,SIGB JGI N/AIEA
GO:0006352GO-bp DNA-templated transcription, initiation JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003700GO-mf DNA-binding transcription factor activity JGI N/AIEA
GO:0016987GO-mf sigma factor activity JGI N/AIEA
PTHR30603PantherFam RNA POLYMERASE SIGMA FACTOR RPO JGI N/AIEA
PF04539Pfam Sigma-70 region 3 JGI N/AIEA
PF04542Pfam Sigma-70 region 2 JGI N/AIEA
PF04545Pfam Sigma-70, region 4 JGI N/AIEA

Gene model name correspondences to Glyma.04g002000 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g00330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g002000
>Glyma.04g002000.1 sequence-type=CDS polypeptide=Glyma.04g002000.1.p locus=Glyma.04g002000 id=Glyma.04g002000.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCGTGTTTGTTGCCGCACTTCAACTGCCACCTCGACACTTTCAGGACTCATCCCTATGCTCTTCCTACCCATCTATCTAAAACAAGACCAAATTTGTGTTTCCAGCCGCAATGTGTGTTGTCTGCCACATCTCCTTCAACGCTGCTTAGTTTGGAAAAGAAGTTGGCATTAGATGCTCCTTCTGATCCGAACACTTCTTGGCCCTATATCGCTGCTGTTTCCCCTCCCTTACAGGCAAACTTTAAATCAACCTTATCTGCGGAATCACTTCTTACTAATGAAGAGGCTGTAATAGTTGCTGCTGCATCTGAAGCTCTTGCTCTTGCTAAAGCAGCCGCGAAGGTTGCAAAGGATGCAGCTTTACTAGTAAAAAAGAAGCCTCCTGCAGAAGCAGAGTATAAATCCCATGTTTCTTCCAAATCTGATGATTTACTTCTCAAATGGTTTAAACAAATGGAAGAAGTGGAAGATGGTGTAGCAGAAGAATCCATGGGTGCTGGAGCAGAAATAATGGAAGGTGTTGACGTAAGCCCCAGCGAAGAGGAATCCGATCTAGAGCCTTCCCATGAGGAACTTGAGCGTCTGCAGGAACAGCTTTCAGACAGTATAGCTGTAAGATCTAGGCGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCAACAGAGAAGGCTACCACAAATTTTACATCATTTAAGCCTGGCTCCTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGACCCACTTCGTTACTTAAGAACAACAACTAGCGCTTCTAGGCTTCTTACTCCAACCGAAGAAATTAAGTTGTCAGCAGGAATACAGGACCTTCTAAAGCTTGAAAAAATCCAGGAGGATCTTGCAGAAAGATTTGGCAGTCAGCCCACGTTTGCTCAATGGGCAGCAGTGGCAGGGGTAGATCAGAAAACACTTAGGAAACGTTTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATACGACTTGTCATATCCATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCAGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCTACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAATTGTATAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTATGACCCCAAAAGCTCCCAGATCTCTGGAACAAAAGATTGGGATCAACCAGAATCTTAAACCCTCAGAAGTAATTTCCGATCCTGATGCCGAAACAGCTGAAGAACAGCTCCTTAAGCAGTTCATGAAGAAGGACCTGGAAGAGGCACTGGACAGTCTCAATCCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGGACGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATCGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGGTTTCATAA

>Glyma.04g002000.2 sequence-type=CDS polypeptide=Glyma.04g002000.2.p locus=Glyma.04g002000 id=Glyma.04g002000.2.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGGAAGAAGTGGAAGATGGTGTAGCAGAAGAATCCATGGGTGCTGGAGCAGAAATAATGGAAGGTGTTGACGTAAGCCCCAGCGAAGAGGAATCCGATCTAGAGCCTTCCCATGAGGAACTTGAGCGTCTGCAGGAACAGCTTTCAGACAGTATAGCTGTAAGATCTAGGCGCCAAACAGAAAGAAAAGCTAAAAGAGTCAGAGCAACAGAGAAGGCTACCACAAATTTTACATCATTTAAGCCTGGCTCCTCCAGCAGGAGAAAGCGTGTTTCTATGCAAGAAGTAGATTATTCAGACCCACTTCGTTACTTAAGAACAACAACTAGCGCTTCTAGGCTTCTTACTCCAACCGAAGAAATTAAGTTGTCAGCAGGAATACAGGACCTTCTAAAGCTTGAAAAAATCCAGGAGGATCTTGCAGAAAGATTTGGCAGTCAGCCCACGTTTGCTCAATGGGCAGCAGTGGCAGGGGTAGATCAGAAAACACTTAGGAAACGTTTAAATTATGGTATATTTTGCAAAGACAAAATGATTAAAAGCAATATACGACTTGTCATATCCATTGCTAAGAATTATCAGGGATCTGGGATGAATCTGCAAGATCTTGTCCAGGAAGGATGCAGAGGCCTTGTAAAAGGTGCAGAGAAGTTTGATGGTACCAAGGGTTTTAAATTCTCTACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCCAGAAAACAATTGTATAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAACTGGGTTGTCAATGAAGAGGCTTAATGCTGTACTTATGACCCCAAAAGCTCCCAGATCTCTGGAACAAAAGATTGGGATCAACCAGAATCTTAAACCCTCAGAAGTAATTTCCGATCCTGATGCCGAAACAGCTGAAGAACAGCTCCTTAAGCAGTTCATGAAGAAGGACCTGGAAGAGGCACTGGACAGTCTCAATCCAAGAGAGAGGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGGACGAAGACCCTGCAAGAGATAGGGGAGATGTTGGGTGTGAGTAGGGAGAGAATTAGGCAAATCGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAATCATTTGCAGCAGTATTTGGTTTCATAA
Predicted protein sequences of Glyma.04g002000
>Glyma.04g002000.1.p sequence-type=predicted peptide transcript=Glyma.04g002000.1 locus=Glyma.04g002000 id=Glyma.04g002000.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSCLLPHFNCHLDTFRTHPYALPTHLSKTRPNLCFQPQCVLSATSPSTLLSLEKKLALDAPSDPNTSWPYIAAVSPPLQANFKSTLSAESLLTNEEAVIVAAASEALALAKAAAKVAKDAALLVKKKPPAEAEYKSHVSSKSDDLLLKWFKQMEEVEDGVAEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS*

>Glyma.04g002000.2.p sequence-type=predicted peptide transcript=Glyma.04g002000.2 locus=Glyma.04g002000 id=Glyma.04g002000.2.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MEEVEDGVAEESMGAGAEIMEGVDVSPSEEESDLEPSHEELERLQEQLSDSIAVRSRRQTERKAKRVRATEKATTNFTSFKPGSSSRRKRVSMQEVDYSDPLRYLRTTTSASRLLTPTEEIKLSAGIQDLLKLEKIQEDLAERFGSQPTFAQWAAVAGVDQKTLRKRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDDEEVAEATGLSMKRLNAVLMTPKAPRSLEQKIGINQNLKPSEVISDPDAETAEEQLLKQFMKKDLEEALDSLNPRERQVVRWRFGMDDGRTKTLQEIGEMLGVSRERIRQIESSAFKKLKNKKRTNHLQQYLVS*






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