Glyma.04g000600

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g000600

Feature Type:	gene_model
Chromosome:	Gm04
Start:	72328
stop:	75769
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g000600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35270.1	AT	Plant regulator RWP-RK family protein	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
PF00564	PFAM	PB1 domain	JGI	N/A	IEA
PF02042	PFAM	RWP-RK domain	JGI	N/A	IEA

Proteins Associated with Glyma.04g000600

Locus	Gene Symbol	Protein Name
	NINA	protein NODULE INCEPTION 1a

Expression Patterns of Glyma.04g000600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g000600

Paralog	Evidence	Comments
Glyma.06g000400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g000600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g00210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g000600

Limit To All Plant Sequences

>Glyma.04g000600.2 sequence-type=transcript locus=Glyma.04g000600 ID=Glyma.04g000600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTGGGTCCTACTGACATTCTAGAAAATTTTACAGTTCTGGGTCATTAAATAGAAGACTTTGATTCCCTGGTAACTGTATAATAAGCAAAGCAGCGCCCAGCTACTTAGAGTAGAGGTCGATCAGATATAAGATAGCATTCCTCGATCTCTCGGTCTTTCTACAAAGTTAGAGTTCAGACATTTCGTTTGTTCATGATCTCACTGCCAAACTAGAATTTTTTTTCTTAATCTTAATTAATTACATAGATACGAGCTAGCAGCTAGCTGCAGGAGGTCAAATTAAAGCGGGAGTAACGTGAAGATCTTGAACTTGATCCCCGTTCCCCTTAGAGAGAGGAAGATGGAATATGGTGGGTTGGTGCAGAATAGTGCATATGGGAGCTTCTCAGAAATTTTTGGCCCAGAAACGGATTTCATAGATGAACTGTTTGTGGAAGGATGCTGGGTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGGGGGGAGGCTAATTCCTCAAAGCCAAACACGATGGCTAGCATGGAGACGTCGGCGCAAATAATATTCCAAGAAGAATCATTATCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGAGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTTATTGCAGTCGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCTGATTCAGGTATGGGTACCCGAACGGAGGAGATCTGCACGTGCTCAGCCTCAGGATAACTACCCATACGCCGCGCTTCTTAATACAACATCAGCTTTTCAGTTTCAGGAGGATTGGGTTCATGACCAGTGGACTCCCAACATCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTACGACGTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGTGGCTCCGCCATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCCGACCTTCACGCCCTTCAGAGTGTTGATTTTACAAGCAGTACTTGTCATCAGAACTTTATTCCACCTGCAGCCGTGACCGCGAAGGGTTTTGACGAGTTGTACCAAAGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTGTCGATTGTGGATCCTGCTAGTTTTGTGGCGGATGTAGAGGTACTGGGTTTCCTGGAAGCGTGCTCTGAGTGTCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATAACTGCCTTCAGCAAGGCGGAATATCCTCTGGCGCACCATGCTAACATGTTTGGCTTGCATGCTGCGGTGGCCATTCCACTCCTGAGTGACTCCGCTGATTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACACCCAAGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTACAACAAGCTTGCAGGAGTTTGCATGTTGTCATGGGAAaggaggaggaggaggaggaggaggaggaggaATTAATCGCGTTGCCGCCCGTTGGCAAAGAAATGGAGtcatcatcatcatcatcCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAGAGTGACAACCAACTGCAATGAACAGGTTAGTGTTGGTGTTGAGAGTGGGGGAGGAGAAGAATCATATACTGCAGCTTTTGGTGGCCGCCGGGGTGCCAGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTTAAAAGGATATGCCGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGAAAACTTCAACTTGTCATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCCAATGGTGTTTCTGAATCATCCAACATCAATAATAAGTTTTTTTCTGAATATAACCAAGGAGCTACTACTTTCAAATCCCCAACTTCGCCTTGCAGTCAGACCACTATTCTGATTTCAGAGAACCAACAACCACTTGTACTTGGTGCATCAATCCAGGTCCAAGAGGAAGCAAAACATTTCGCCCACCATCTTGAGCCTCTACCACCAGCTCCCTTGCCCCAATCTAGTACTAGTCTCTGGAACACGGCCGGCACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGCTTTAGCTTGCAACCAAACTGGGGATTCAGAGATTTGCAGATGGAGATTGCTAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGACGAGTGTAAAGACATAAATACATCATCTCAGAGCCGTACAATTAGACTCTTCCTCTTTCAAGCTTCGCCTCTAAATCATGCAAATGCATTTCGAGGCACCAGCCCCTCCTAGATAACACCATTTCCTTGTTAGAGTAATTAGCGCCAGTAATGTCAACAATCCCAAGTGAAAACCATTTTTCTATTACTTCTCCTCATTCAATAGATACAAGGATATTAGTTCCAAATAATCAACTTTGAAGTGCTAAGAATCTATGCTTTATACACATGGTCTCTCTATTACTCCATCGCATTTGTTCGCATCCCCAGCTCCCTAC

Coding sequences of Glyma.04g000600

Limit To All Plant Sequences

>Glyma.04g000600.1 sequence-type=CDS polypeptide=Glyma.04g000600.1.p locus=Glyma.04g000600 ID=Glyma.04g000600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATATGGTGGGTTGGTGCAGAATAGTGCATATGGGAGCTTCTCAGAAATTTTTGGCCCAGAAACGGATTTCATAGATGAACTGTTTGTGGAAGGATGCTGGGTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGGGGGGAGGCTAATTCCTCAAAGCCAAACACGATGGCTAGCATGGAGACGTCGGCGCAAATAATATTCCAAGAAGAATCATTATCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGAGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTTATTGCAGTCGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCTGATTCAGGTATGGGTACCCGAACGGAGGAGATCTGCACGTGCTCAGCCTCAGGATAACTACCCATACGCCGCGCTTCTTAATACAACATCAGCTTTTCAGTTTCAGGAGGATTGGGTTCATGACCAGTGGACTCCCAACATCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTACGACGTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGTGGCTCCGCCATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCCGACCTTCACGCCCTTCAGAGTGTTGATTTTACAAGCAGTACTTGTCATCAGAACTTTATTCCACCTGCAGCCGTGACCGCGAAGGGTTTTGACGAGTTGTACCAAAGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTGTCGATTGTGGATCCTGCTAGTTTTGTGGCGGATGTAGAGGTACTGGGTTTCCTGGAAGCGTGCTCTGAGTGTCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATAACTGCCTTCAGCAAGGCGGAATATCCTCTGGCGCACCATGCTAACATGTTTGGCTTGCATGCTGCGGTGGCCATTCCACTCCTGAGTGACTCCGCTGATTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACACCCAAGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTACAACAAGCTTGCAGGAGTTTGCATGTTGTCATGGGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAATTAATCGCGTTGCCGCCCGTTGGCAAAGAAATGGAGTCATCATCATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAGAGTGACAACCAACTGCAATGAACAGGTTAGTGTTGGTGTTGAGAGTGGGGGAGGAGAAGAATCATATACTGCAGCTTTTGGTGGCCGCCGGGGTGCCAGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTTAAAAGGATATGCCGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGAAAACTTCAACTTGTCATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCCAATGGTGTTTCTGAATCATCCAACATCAATAATAAGTTTTTTTCTGAATATAACCAAGGAGCTACTACTTTCAAATCCCCAACTTCGCCTTGCAGTCAGACCACTATTCTGATTTCAGAGAACCAACAACCACTTGTACTTGGTGCATCAATCCAGGTCCAAGAGGAAGCAAAACATTTCGCCCACCATCTTGAGCCTCTACCACCAGCTCCCTTGCCCCAATCTAGTACTAGTCTCTGGAACACGGCCGGCACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGCTTTAGCTTGCAACCAAACTGGGGATTCAGAGATTTGCAGATGGAGATTGCTAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGACGAGTGTAAAGACATAAATACATCATCTCAGAGCCGTACAATTAGACTCTTCCTCTTTCAAGCTTCGCCTCTAAATCATGCAAATGCATTTCGAGGCACCAGCCCCTCCTAG

>Glyma.04g000600.2 sequence-type=CDS polypeptide=Glyma.04g000600.2.p locus=Glyma.04g000600 ID=Glyma.04g000600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATATGGTGGGTTGGTGCAGAATAGTGCATATGGGAGCTTCTCAGAAATTTTTGGCCCAGAAACGGATTTCATAGATGAACTGTTTGTGGAAGGATGCTGGGTGGAAACAAGGGTTGGATCGTACCTGAATTGTGGGGGGGAGGCTAATTCCTCAAAGCCAAACACGATGGCTAGCATGGAGACGTCGGCGCAAATAATATTCCAAGAAGAATCATTATCAGACCCGGAAATTAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGGGAGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTTATTGCAGTCGGGTACTTGAAAGAATACGCCAAGAATTCCAATTTGCTGATTCAGGTATGGGTACCCGAACGGAGGAGATCTGCACGTGCTCAGCCTCAGGATAACTACCCATACGCCGCGCTTCTTAATACAACATCAGCTTTTCAGTTTCAGGAGGATTGGGTTCATGACCAGTGGACTCCCAACATCCGCTTCTTCAGAAGTCACGAGTACCCGCGCCATCTACGACGTCCTGGATCTCTCGCACTTCCTGTCTTTGAGAGTGGCTCCGCCATGTGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCCGACCTTCACGCCCTTCAGAGTGTTGATTTTACAAGCAGTACTTGTCATCAGAACTTTATTCCACCTGCAGCCGTGACCGCGAAGGGTTTTGACGAGTTGTACCAAAGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTATGCAAGGCGCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTGTCGATTGTGGATCCTGCTAGTTTTGTGGCGGATGTAGAGGTACTGGGTTTCCTGGAAGCGTGCTCTGAGTGTCACCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGTTTTGCAAATGACATAACTGCCTTCAGCAAGGCGGAATATCCTCTGGCGCACCATGCTAACATGTTTGGCTTGCATGCTGCGGTGGCCATTCCACTCCTGAGTGACTCCGCTGATTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACACCCAAGAGCAGAAGCAGATGCTCAACTCCTTGTCTATGCTAGTACAACAAGCTTGCAGGAGTTTGCATGTTGTCATGGGAAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAATTAATCGCGTTGCCGCCCGTTGGCAAAGAAATGGAGTCATCATCATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAGAGTGACAACCAACTGCAATGAACAGGTTAGTGTTGGTGTTGAGAGTGGGGGAGGAGAAGAATCATATACTGCAGCTTTTGGTGGCCGCCGGGGTGCCAGGAAATCAGCTGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTGAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTTAAAAGGATATGCCGACAACATGGGATCACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCCTTAAGAAAACTTCAACTTGTCATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTCCCAGAGTTGAGCTCTGCCAATGGTGTTTCTGAATCATCCAACATCAATAATAAGTTTTTTTCTGAATATAACCAAGGAGCTACTACTTTCAAATCCCCAACTTCGCCTTGCAGTCAGACCACTATTCTGATTTCAGAGAACCAACAACCACTTGTACTTGGTGCATCAATCCAGGTCCAAGAGGAAGCAAAACATTTCGCCCACCATCTTGAGCCTCTACCACCAGCTCCCTTGCCCCAATCTAGTACTAGTCTCTGGAACACGGCCGGCACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGCTTTAGCTTGCAACCAAACTGGGGATTCAGAGATTTGCAGATGGAGATTGCTAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGACGAGTGTAAAGACATAAATACATCATCTCAGAGCCGTACAATTAGACTCTTCCTCTTTCAAGCTTCGCCTCTAAATCATGCAAATGCATTTCGAGGCACCAGCCCCTCCTAG

Predicted protein sequences of Glyma.04g000600

Limit To All Plant Sequences

>Glyma.04g000600.1.p sequence-type=predicted peptide transcript=Glyma.04g000600.1 locus=Glyma.04g000600 ID=Glyma.04g000600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYGGLVQNSAYGSFSEIFGPETDFIDELFVEGCWVETRVGSYLNCGGEANSSKPNTMASMETSAQIIFQEESLSDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLLIQVWVPERRRSARAQPQDNYPYAALLNTTSAFQFQEDWVHDQWTPNIRFFRSHEYPRHLRRPGSLALPVFESGSAMCLGVVEILMPNNPDLHALQSVDFTSSTCHQNFIPPAAVTAKGFDELYQSALNEIVEVLTCVCKAHNLPLALTWAPCIQQGKSGCGHSNDENYVSIVDPASFVADVEVLGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITAFSKAEYPLAHHANMFGLHAAVAIPLLSDSADFVLEFFLPKDCHDTQEQKQMLNSLSMLVQQACRSLHVVMGKEEEEEEEEEELIALPPVGKEMESSSSSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFRVTTNCNEQVSVGVESGGGEESYTAAFGGRRGARKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESSNINNKFFSEYNQGATTFKSPTSPCSQTTILISENQQPLVLGASIQVQEEAKHFAHHLEPLPPAPLPQSSTSLWNTAGTFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAREWVLLTCDADLDECKDINTSSQSRTIRLFLFQASPLNHANAFRGTSPS*

>Glyma.04g000600.2.p sequence-type=predicted peptide transcript=Glyma.04g000600.2 locus=Glyma.04g000600 ID=Glyma.04g000600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEYGGLVQNSAYGSFSEIFGPETDFIDELFVEGCWVETRVGSYLNCGGEANSSKPNTMASMETSAQIIFQEESLSDPEISLMVGKRWWIGPRENPGPSSSVKERLVIAVGYLKEYAKNSNLLIQVWVPERRRSARAQPQDNYPYAALLNTTSAFQFQEDWVHDQWTPNIRFFRSHEYPRHLRRPGSLALPVFESGSAMCLGVVEILMPNNPDLHALQSVDFTSSTCHQNFIPPAAVTAKGFDELYQSALNEIVEVLTCVCKAHNLPLALTWAPCIQQGKSGCGHSNDENYVSIVDPASFVADVEVLGFLEACSECHLLGGQGVVGTAFTTTKPCFANDITAFSKAEYPLAHHANMFGLHAAVAIPLLSDSADFVLEFFLPKDCHDTQEQKQMLNSLSMLVQQACRSLHVVMGKEEEEEEEEEELIALPPVGKEMESSSSSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFRVTTNCNEQVSVGVESGGGEESYTAAFGGRRGARKSAGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSANGVSESSNINNKFFSEYNQGATTFKSPTSPCSQTTILISENQQPLVLGASIQVQEEAKHFAHHLEPLPPAPLPQSSTSLWNTAGTFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDAREWVLLTCDADLDECKDINTSSQSRTIRLFLFQASPLNHANAFRGTSPS*

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