Glyma.04g000400

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Report for Sequence Feature Glyma.04g000400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	52894
stop:	67396
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g000400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38240.1	AT	alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative	JGI	N/A	IEA
GO:0006486	GO-bp	protein glycosylation	EnsemblGenomes	N/A	IEA
GO:0006486	GO-bp	protein glycosylation	JGI	N/A	IEA
GO:0000139	GO-cc	Golgi membrane	JGI	N/A	IEA
GO:0008375	GO-mf	acetylglucosaminyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008375	GO-mf	acetylglucosaminyltransferase activity	JGI	N/A	IEA
KOG1413	KOG	N-acetylglucosaminyltransferase I	JGI	N/A	IEA
PTHR10468	Panther	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1/ALPHA-1,3-MANNOSYL-GLYCOPROTEIN 2-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE	JGI	N/A	IEA
PF03071	PFAM	GNT-I family	JGI	N/A	IEA

Expression Patterns of Glyma.04g000400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g000400 not represented in the dataset	Glyma.04g000400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g000400

Paralog	Evidence	Comments
Glyma.06g000300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g000400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g00200	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g000400

Limit To All Plant Sequences

>Glyma.04g000400.2 sequence-type=transcript locus=Glyma.04g000400 ID=Glyma.04g000400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGGTTTACTTTTTTTTCATCGATCTGAACATAACATTTTTTTTTATCAAATGCAAAACAAAAATTTGCATTTACAAATTAAAACCTACTTTTAATTTTGAAAAATTTAAAAACCTAATAAAGAGGAGAAATTAGGCAATTGGAAAATGGTTTCTCGTCTGACAATTGAGTTGACTGGAGGAGTTACATGTAGCTGAGCGCAAGGCATAGAAATTGCTCTTAACGTAATGTATATCAGAAACCTGCTGTAGTGCGCGTAGTAATTCAAAATTTGTGGTAAAGCAAATGGCGAAAGTTTTCTGTGATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTACAAGATCTTGAAAGAAAAGACCTACAGAGGCTGATTGATAAAATGCAGGTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCACGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTAATCATCCTTGAAGATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAGGATAAATATTCTATGCACTTTGCGAATGTTATTAAGAAAGCTACACCTGTCTATGGAGCTGACATGGTTCTAAAGGCATCTAATATAGATGGCAATGTGCGCATCAAATATAAAGATCAGTCAGACTTTGAAAACATTGCTCACCAATTTGGTATATTTCAAGAGTGGAAGGATGGTGAATAGTAAATGCAGTAATTTG

Coding sequences of Glyma.04g000400

Limit To All Plant Sequences

>Glyma.04g000400.1 sequence-type=CDS polypeptide=Glyma.04g000400.1.p locus=Glyma.04g000400 ID=Glyma.04g000400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAAGTTTTCTGTGATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTACAAGATCTTGAAAGAAAAGACCTACAGAGGCTGATTGATAAAATGCAGGTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCACGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTAATCATCCTTGAAGATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAGGATAAATATTCTATGCACTTTGCGAATGTTATTAAGAAAGCTACACCTGTCTATGGAGCTGACATGGTTCTAAAGGCATCTAATATAGATGGCAATGTGCGCATCAAATATAAAGATCAGTCAGACTTTGAAAACATTGCTCACCAATTTGGTATATTTCAAGAGTGGAAGGATGGTGTGCCCAGGACAGCATATAAAGGAGTAGTCGTTTTCAGATATCAAACCTCACGACGTATATTCCTTGTTGGTCCAGAATCTTTGAAGCTACTTCAGATCGAAGAGTCTTAA

>Glyma.04g000400.2 sequence-type=CDS polypeptide=Glyma.04g000400.2.p locus=Glyma.04g000400 ID=Glyma.04g000400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAAGTTTTCTGTGATTTTCGGTTCCTTCTCTTGGTTGCCGCTGGCGTCTTCATCTATATCCAGATGAGGCTTTTCGCAACTCAATCAGAATATGCTGATCGCCTAGCTGCAGCTATTGAAGCTGAAAACCATTGTACAAGTCAAACGCGATCACTGATTGATCAGATTAGCTTGCAACAAGGACGAATTGTGGCCCTAGAAGAAGAGCGGAAACGCCGAGACCAAGAATGTGGACAAATGAAGTCTCTTGTACAAGATCTTGAAAGAAAAGACCTACAGAGGCTGATTGATAAAATGCAGGTTCCGGTGGCTGCTGTTGTGATCATGGCATGTAATCGTGCTGATTACCTAGAGAGGACTATTAATTCTGTATTAAAATACCAAAGGCCCATTTCTTCAAGATATCCTTTATTTGTATCTCAGGATGGATCAAATCCAAATGTTAAAAGTAAGGCTTTGAGCTATGATCAGTTATCTTATATGCAGCACTTGGATTTTGAACCAGTTCAAACTGAACGGCCAGGAGAGTTAACTGCTTACTACAAAATTGCACGTCATTACAAGTGGGCTCTAGATCAACTGTTCTACAAGCATAACTTCAGCCGTGTAATCATCCTTGAAGATGACATGGAAATAGCACCTGATTTCTTTGATTATTTTGAAGCTGCAGCGAGTCTCCTTGAGAAGGATAAATCCATTATGGCTGTTTCCTCATGGAATGACAATGGACAAAAGCAGTTTGTACATGATCCATATGAACTTTATCGCTCTGACTTCTTTCCTGGATTAGGATGGATGCTGGCCAGATCTACATGGAATGAGCTATCACCAAAATGGCCTAAAGCTTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATGGTTCTAGTTTGGGACAGTTTTTTAAGCAATATCTTGAGCCAATCAAGCTGAATGATGTCAAGGTTGATTGGAAATTAATGGATCTGAGCTATTTACTGGAGGATAAATATTCTATGCACTTTGCGAATGTTATTAAGAAAGCTACACCTGTCTATGGAGCTGACATGGTTCTAAAGGCATCTAATATAGATGGCAATGTGCGCATCAAATATAAAGATCAGTCAGACTTTGAAAACATTGCTCACCAATTTGGTATATTTCAAGAGTGGAAGGATGGTGAATAG

Predicted protein sequences of Glyma.04g000400

Limit To All Plant Sequences

>Glyma.04g000400.1.p sequence-type=predicted peptide transcript=Glyma.04g000400.1 locus=Glyma.04g000400 ID=Glyma.04g000400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKVFCDFRFLLLVAAGVFIYIQMRLFATQSEYADRLAAAIEAENHCTSQTRSLIDQISLQQGRIVALEEERKRRDQECGQMKSLVQDLERKDLQRLIDKMQVPVAAVVIMACNRADYLERTINSVLKYQRPISSRYPLFVSQDGSNPNVKSKALSYDQLSYMQHLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEAAASLLEKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLARSTWNELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFKQYLEPIKLNDVKVDWKLMDLSYLLEDKYSMHFANVIKKATPVYGADMVLKASNIDGNVRIKYKDQSDFENIAHQFGIFQEWKDGVPRTAYKGVVVFRYQTSRRIFLVGPESLKLLQIEES*

>Glyma.04g000400.2.p sequence-type=predicted peptide transcript=Glyma.04g000400.2 locus=Glyma.04g000400 ID=Glyma.04g000400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKVFCDFRFLLLVAAGVFIYIQMRLFATQSEYADRLAAAIEAENHCTSQTRSLIDQISLQQGRIVALEEERKRRDQECGQMKSLVQDLERKDLQRLIDKMQVPVAAVVIMACNRADYLERTINSVLKYQRPISSRYPLFVSQDGSNPNVKSKALSYDQLSYMQHLDFEPVQTERPGELTAYYKIARHYKWALDQLFYKHNFSRVIILEDDMEIAPDFFDYFEAAASLLEKDKSIMAVSSWNDNGQKQFVHDPYELYRSDFFPGLGWMLARSTWNELSPKWPKAYWDDWLRLKENHKGRQFIRPEVCRTYNFGEHGSSLGQFFKQYLEPIKLNDVKVDWKLMDLSYLLEDKYSMHFANVIKKATPVYGADMVLKASNIDGNVRIKYKDQSDFENIAHQFGIFQEWKDGE*

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