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Report for Sequence Feature Glyma.04G202000

Feature Type:gene_model
Chromosome:Gm04
Start:47480458
stop:47483536
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04G202000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61850.1AT floral meristem identity control protein LEAFY (LFY) JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF01698PFAM Floricaula / Leafy protein JGI N/AIEA

Paralogs of Glyma.04G202000
ParalogEvidenceComments
Glyma.06g163600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04G202000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g37900 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04G202000
>Glyma.04g202000.1 sequence-type=primary primary transcript locus=Glyma.04g202000 ID=Glyma.04g202000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGTAccgtcctcccacccgctccggcgccgcccccgcgcccgtcccTCCTCGAATACGCGATGGCTCCCCCGCCGGTGACCACGGCGTTCCACCCTGCAAGGACGGCGGCTCCGCGCGAGCTCGGAGGACTGGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCGGCGAAGATCGCCGAGCTTGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTTTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGCCGCCGCGTCGAAGACGACGACATCAAGCGCCGcaacaacaacagcaacaacCTCCTCTCCACGGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGACCCTGGCGAAGTTGCACGTGGAAAGAAGAACGGTTTGGACTATCTGTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCAAGCTACATCAACAAGCCAAAGATGCGACACTACGTGCACTGCTACGCCTTACACTGTCTAGACGAGGAGGTCTCAAACGAGCTCCGAAGGGCGTTCAAGGAGAGAGGGGAGAACGTTGGGGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATTGCCGCGCGTCAAGGTTGGGACATTGATGCCATATTCAACGCACATCCTCGTCTTTCTATTTGGTATGTTCCGACAAAGCTTCGTCAGCTTTGTCACGCTGAGAGAAACAGTGTCTCGGCTTCAAGCTCCGTGTCTGCTGGCAGTGCTCACCTTCCCTTCTAAATCCTCATGCATGTAGTCGTGTACTGGTTTAGTAATCGTGATAGTTACTAGTTAGTAATTAATAGATGTGTTGAATGAACCTGGCTAGCTCCCACGCCACGCTATGAAATGAAGGATACACACTTATATATATAGCAATGGA
Coding sequences of Glyma.04G202000
>Glyma.04g202000.1 sequence-type=CDS polypeptide=Glyma.04g202000.1.p locus=Glyma.04g202000 ID=Glyma.04g202000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGTACCGTCCTCCCACCCGCTCCGGCGCCGCCCCCGCGCCCGTCCCTCCTCGAATACGCGATGGCTCCCCCGCCGGTGACCACGGCGTTCCACCCTGCAAGGACGGCGGCTCCGCGCGAGCTCGGAGGACTGGAGGAGCTTTTCCAGGCCTACGGCATCCGCTACTACACGGCGGCGAAGATCGCCGAGCTTGGGTTCACGGTGAGCACGCTGGTGGACATGAAAGACGAGGAGCTCGACGACATGATGAACAGCCTTTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAGCGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGCCGCCGCGTCGAAGACGACGACATCAAGCGCCGCAACAACAACAGCAACAACCTCCTCTCCACGGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGACCCTGGCGAAGTTGCACGTGGAAAGAAGAACGGTTTGGACTATCTGTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCAAGCTACATCAACAAGCCAAAGATGCGACACTACGTGCACTGCTACGCCTTACACTGTCTAGACGAGGAGGTCTCAAACGAGCTCCGAAGGGCGTTCAAGGAGAGAGGGGAGAACGTTGGGGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATTGCCGCGCGTCAAGGTTGGGACATTGATGCCATATTCAACGCACATCCTCGTCTTTCTATTTGGTATGTTCCGACAAAGCTTCGTCAGCTTTGTCACGCTGAGAGAAACAGTGTCTCGGCTTCAAGCTCCGTGTCTGCTGGCAGTGCTCACCTTCCCTTCTAA
Predicted protein sequences of Glyma.04G202000
>Glyma.04g202000.1.p sequence-type=predicted peptide transcript=Glyma.04g202000.1 locus=Glyma.04g202000 ID=Glyma.04g202000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPDAFTASLFKWDPRTVLPPAPAPPPRPSLLEYAMAPPPVTTAFHPARTAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNSNNLLSTDTTTNALDALSQEDPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSVSASSSVSAGSAHLPF*






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