Glyma.04G128700

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Report for Sequence Feature Glyma.04G128700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	17902621
stop:	17908873
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04G128700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46410.2	AT	SCP1-like small phosphatase 4	JGI	N/A	IEA
GO:0006470	GO-bp	protein dephosphorylation	EnsemblGenomes	N/A	IEA
GO:0016311	GO-bp	dephosphorylation	EnsemblGenomes	N/A	IEA
GO:0004721	GO-mf	phosphoprotein phosphatase activity	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0016791	GO-mf	phosphatase activity	EnsemblGenomes	N/A	IEA
KOG1605	KOG	TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation)	JGI	N/A	IEA
PTHR12210	Panther	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	JGI	N/A	IEA
PTHR12210:SF6	Panther		JGI	N/A	IEA
PF03031	PFAM	NLI interacting factor-like phosphatase	JGI	N/A	IEA

Expression Patterns of Glyma.04G128700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04G128700 not represented in the dataset	Glyma.04G128700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04G128700

Paralog	Evidence	Comments
Glyma.06g314700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04G128700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.04g128700	Wm82.a4.v1	ISS	As supplied by JGI
Glyma04g15970	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04G128700

Limit To All Plant Sequences

>Glyma.04g128700.2 sequence-type=transcript locus=Glyma.04g128700 ID=Glyma.04g128700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGACCCCTTTTCGCTTCTCTGACTCACTTCTCTGTGTGCTAGAAAGAGAAAGTAAGAGAGAAGAGAGAGAAAGAGAGGGAAAGGGAGAGAAAATCATAGATTTTTGCAAAAATGAAGAATATTCTATGGATCTTGACAATAAAGGAGACATGGGCCAGCCCTCTCTTTCATTCAATGGATGTACAGATTCAATGGAGCAGACTGATATTTCATTCAATGGATGTACAGATTCAGTAGTAGCAAGGGATTCTTTGTCATCTTCTCTTTCCCCAGATTCAGAAGCAATTTTGCCTTATAATGGGCTTAATTATGCCCATTGTCAGCAATTTGAAACAGTTAATAGGGAACAGTTCACATGGGAACCTCAGCTGGATGACAATTTCTTCAGCACTTTCCAAATGTTTGACCTTGACTCTGCATATGAAACTGGGTTTCCCATTGATGGGCTAACTTTATTTGATGACAGCCAAAGCTATTATAACCTTTCTGATCTTCTATTTCCTGGGACAAATTTTACCATCCATGGCACTGAGGAAAATATGGAGTATCCCACTCTCAAGGAGACAATAGGAGCAGCAGATTTTACTTTTGGAGGATCCTCTATAGGGTTTCAACAGACGTCTGATTCTTCATGGGTTAATCATCTCATGTGCCATCAGGCCATTCCATTCACTGAAGAACTTTCTGTCATCTCCAGTGAGATTTCTTCAGACAGAGTAGATTATTGGGATCAAGAGACATTCATTAAGGGGGTTTTAGAGTTAGCAGATGATGCTAACTCATTGCCTGCATTACTCATCAATGAAACAAGCAAAAGGAAGAAGGTTACCCTTGTCCTTGATTTGGATGAAACGCTGATCCATTCTTCCATGGGGCAATGCGATGGTGCGGCTGACTTCACATTTAAGATGATCACAGACAGGGAGTTGACTGTATATGTACGAAAGAGGCCCTTTCTCCAAGAATTTTTGGTGAAAGTATCGGAGATGTTTGAAATCATCATTTTCACAGCTAGTAAACGCATGTATGCTGAAACATTGCTTGATGTTCTTGATCCTGATAAAAAGTTTTTTTCTCGACGAGTGTACCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGGTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGACGACCCCACTGACTCTGCTTTGATGTCTTTGCTCCCCTTTCTTGAGAAACTGGTTGATGTGGATGATGTTCGCCCCCTTATTGCAGAGAAATTTGGGGCAAGGACTTAATTTTGCACTTGTGGTCGCCTTGCCCTTCTTGGAAGCAGTAGATAACTTAATCTTAGGATTCTAGATCTCCTTTCGATAACCCTACCTACCCAATTTTCATAGAAGAGAATGTTACCTAGTTAGGGTTTTTTTTTTTTAGTTACATAGATGTAGTTCTTTTTAAACATTTTATTTGAGTTTTTGGTGAATATATATTATTTACAAATGGCTATGATTCTATTGTAGCCAAATAGCatatatatatatatataAGGAAAAAAAATGTACATAAACAGTGCTATAATTTAAGTTTTGGCTTTTGTTAATGCATGCAGTTAGT

>Glyma.04g128700.3 sequence-type=transcript locus=Glyma.04g128700 ID=Glyma.04g128700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTTCGCTTCTCTGACTCACTTCTCTGTGTGCTAGAAAGAGAAAGTAAGAGAGAAGAGAGAGAAAGAGAGGGAAAGGGAGAGAAAATCATAGAAGTCCAGATTCAATGCCTGCTGTTAAAATGAAGGCTAAGGCAATTGCAACCTGCAAAAAAGATGGGAGCTATCCTCATGTGTCTCAGAATTCAAATAAAATATCTAAATCCACCGTTGTTAGAGTAACTAATGAATTGGTAAATTTAGCTATCTCCAGCCAAACATCTCAAAATGATTTTTGCAAAAATGAAGAATATTCTATGGATCTTGACAATAAAGGAGACATGGGCCAGCCCTCTCTTTCATTCAATGGATGTACAGATTCAATGGAGCAGACTGATATTTCATTCAATGGATGTACAGATTCAGTAGTAGCAAGGGATTCTTTGTCATCTTCTCTTTCCCCAGATTCAGAAGCAATTTTGCCTTATAATGGGCTTAATTATGCCCATTGTCAGCAATTTGAAACAGTTAATAGGGAACAGTTCACATGGGAACCTCAGCTGGATGACAATTTCTTCAGCACTTTCCAAATGTTTGACCTTGACTCTGCATATGAAACTGGGTTTCCCATTGATGGGCTAACTTTATTTGATGACAGCCAAAGCTATTATAACCTTTCTGATCTTCTATTTCCTGGGACAAATTTTACCATCCATGGCACTGAGGAAAATATGGAGTATCCCACTCTCAAGGAGACAATAGGAGCAGCAGATTTTACTTTTGGAGGATCCTCTATAGGGTTTCAACAGACGTCTGATTCTTCATGGGTTAATCATCTCATGTGCCATCAGGCCATTCCATTCACTGAAGAACTTTCTGTCATCTCCAGTGAGATTTCTTCAGACAGAGTAGATTATTGGGATCAAGAGACATTCATTAAGGGGGTTTTAGAGTTAGCAGATGATGCTAACTCATTGCCTGCATTACTCATCAATGAAACAAGCAAAAGGAAGAAGGTTACCCTTGTCCTTGATTTGGATGAAACGCTGATCCATTCTTCCATGGGGCAATGCGATGGTGCGGCTGACTTCACATTTAAGATGATCACAGACAGGGAGTTGACTGTATATGTACGAAAGAGGCCCTTTCTCCAAGAATTTTTGGTGAAAGTATCGGAGATGTTTGAAATCATCATTTTCACAGCTAGTAAACGCATGTATGCTGAAACATTGCTTGATGTTCTTGATCCTGATAAAAAGTTTTTTTCTCGACGAGTGTACCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGGTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGACGACCCCACTGACTCTGCTTTGATGTCTTTGCTCCCCTTTCTTGAGAAACTGGTTGATGTGGATGATGTTCGCCCCCTTATTGCAGAGAAATTTGGGGCAAGGACTTAATTTTGCACTTGTGGTCGCCTTGCCCTTCTTGGAAGCAGTAGATAACTTAATCTTAGGATTCTAGATCTCCTTTCGATAACCCTACCTACCCAATTTTCATAGAAGAGAATGTTACCTAGTTAGGGTTTTTTTTTTTTAGTTACATAGATGTAGTTCTTTTTAAACATTTTATTTGAGTTTTTGGTGAATATATATTATTTACAAATGGCTATGATTCTATTGTAGCCAAATAGCatatatatatatatataAGGAAAAAAAATGTACATAAACAGTGCTATAATTTAAGTTTTGGCTTTTGTTAATGCATGCAGTTAGT

Coding sequences of Glyma.04G128700

Limit To All Plant Sequences

>Glyma.04g128700.1 sequence-type=CDS polypeptide=Glyma.04g128700.1.p locus=Glyma.04g128700 ID=Glyma.04g128700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTGCTGTTAAAATGAAGGCTAAGGCAATTGCAACCTGCAAAAAAGATGGGAGCTATCCTCATGTGTCTCAGAATTCAAATAAAATATCTAAATCCACCGTTGTTAGAGTAACTAATGAATTGGTAAATTTAGCTATCTCCAGCCAAACATCTCAAAATGATTTTTGCAAAAATGAAGAATATTCTATGGATCTTGACAATAAAGGAGACATGGGCCAGCCCTCTCTTTCATTCAATGGATGTACAGATTCAATGGAGCAGACTGATATTTCATTCAATGGATGTACAGATTCAGTAGTAGCAAGGGATTCTTTGTCATCTTCTCTTTCCCCAGATTCAGAAGCAATTTTGCCTTATAATGGGCTTAATTATGCCCATTGTCAGCAATTTGAAACAGTTAATAGGGAACAGTTCACATGGGAACCTCAGCTGGATGACAATTTCTTCAGCACTTTCCAAATGTTTGACCTTGACTCTGCATATGAAACTGGGTTTCCCATTGATGGGCTAACTTTATTTGATGACAGCCAAAGCTATTATAACCTTTCTGATCTTCTATTTCCTGGGACAAATTTTACCATCCATGGCACTGAGGAAAATATGGAGTATCCCACTCTCAAGGAGACAATAGGAGCAGCAGATTTTACTTTTGGAGGATCCTCTATAGGGTTTCAACAGACGTCTGATTCTTCATGGGTTAATCATCTCATGTGCCATCAGGCCATTCCATTCACTGAAGAACTTTCTGTCATCTCCAGTGAGATTTCTTCAGACAGAGTAGATTATTGGGATCAAGAGACATTCATTAAGGGGGTTTTAGAGTTAGCAGATGATGCTAACTCATTGCCTGCATTACTCATCAATGAAACAAGCAAAAGGAAGAAGGTTACCCTTGTCCTTGATTTGGATGAAACGCTGATCCATTCTTCCATGGGGCAATGCGATGGTGCGGCTGACTTCACATTTAAGATGATCACAGACAGGGAGTTGACTGTATATGTACGAAAGAGGCCCTTTCTCCAAGAATTTTTGGTGAAAGTATCGGAGATGTTTGAAATCATCATTTTCACAGCTAGTAAACGCATGTATGCTGAAACATTGCTTGATGTTCTTGATCCTGATAAAAAGTTTTTTTCTCGACGAGTGTACCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGGTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGACGACCCCACTGACTCTGCTTTGATGTCTTTGCTCCCCTTTCTTGAGAAACTGGTTGATGTGGATGATGTTCGCCCCCTTATTGCAGAGAAATTTGGGGCAAGGACTTAA

>Glyma.04g128700.2 sequence-type=CDS polypeptide=Glyma.04g128700.2.p locus=Glyma.04g128700 ID=Glyma.04g128700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCTTGACAATAAAGGAGACATGGGCCAGCCCTCTCTTTCATTCAATGGATGTACAGATTCAATGGAGCAGACTGATATTTCATTCAATGGATGTACAGATTCAGTAGTAGCAAGGGATTCTTTGTCATCTTCTCTTTCCCCAGATTCAGAAGCAATTTTGCCTTATAATGGGCTTAATTATGCCCATTGTCAGCAATTTGAAACAGTTAATAGGGAACAGTTCACATGGGAACCTCAGCTGGATGACAATTTCTTCAGCACTTTCCAAATGTTTGACCTTGACTCTGCATATGAAACTGGGTTTCCCATTGATGGGCTAACTTTATTTGATGACAGCCAAAGCTATTATAACCTTTCTGATCTTCTATTTCCTGGGACAAATTTTACCATCCATGGCACTGAGGAAAATATGGAGTATCCCACTCTCAAGGAGACAATAGGAGCAGCAGATTTTACTTTTGGAGGATCCTCTATAGGGTTTCAACAGACGTCTGATTCTTCATGGGTTAATCATCTCATGTGCCATCAGGCCATTCCATTCACTGAAGAACTTTCTGTCATCTCCAGTGAGATTTCTTCAGACAGAGTAGATTATTGGGATCAAGAGACATTCATTAAGGGGGTTTTAGAGTTAGCAGATGATGCTAACTCATTGCCTGCATTACTCATCAATGAAACAAGCAAAAGGAAGAAGGTTACCCTTGTCCTTGATTTGGATGAAACGCTGATCCATTCTTCCATGGGGCAATGCGATGGTGCGGCTGACTTCACATTTAAGATGATCACAGACAGGGAGTTGACTGTATATGTACGAAAGAGGCCCTTTCTCCAAGAATTTTTGGTGAAAGTATCGGAGATGTTTGAAATCATCATTTTCACAGCTAGTAAACGCATGTATGCTGAAACATTGCTTGATGTTCTTGATCCTGATAAAAAGTTTTTTTCTCGACGAGTGTACCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGGTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGACGACCCCACTGACTCTGCTTTGATGTCTTTGCTCCCCTTTCTTGAGAAACTGGTTGATGTGGATGATGTTCGCCCCCTTATTGCAGAGAAATTTGGGGCAAGGACTTAA

>Glyma.04g128700.3 sequence-type=CDS polypeptide=Glyma.04g128700.3.p locus=Glyma.04g128700 ID=Glyma.04g128700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTGCTGTTAAAATGAAGGCTAAGGCAATTGCAACCTGCAAAAAAGATGGGAGCTATCCTCATGTGTCTCAGAATTCAAATAAAATATCTAAATCCACCGTTGTTAGAGTAACTAATGAATTGGTAAATTTAGCTATCTCCAGCCAAACATCTCAAAATGATTTTTGCAAAAATGAAGAATATTCTATGGATCTTGACAATAAAGGAGACATGGGCCAGCCCTCTCTTTCATTCAATGGATGTACAGATTCAATGGAGCAGACTGATATTTCATTCAATGGATGTACAGATTCAGTAGTAGCAAGGGATTCTTTGTCATCTTCTCTTTCCCCAGATTCAGAAGCAATTTTGCCTTATAATGGGCTTAATTATGCCCATTGTCAGCAATTTGAAACAGTTAATAGGGAACAGTTCACATGGGAACCTCAGCTGGATGACAATTTCTTCAGCACTTTCCAAATGTTTGACCTTGACTCTGCATATGAAACTGGGTTTCCCATTGATGGGCTAACTTTATTTGATGACAGCCAAAGCTATTATAACCTTTCTGATCTTCTATTTCCTGGGACAAATTTTACCATCCATGGCACTGAGGAAAATATGGAGTATCCCACTCTCAAGGAGACAATAGGAGCAGCAGATTTTACTTTTGGAGGATCCTCTATAGGGTTTCAACAGACGTCTGATTCTTCATGGGTTAATCATCTCATGTGCCATCAGGCCATTCCATTCACTGAAGAACTTTCTGTCATCTCCAGTGAGATTTCTTCAGACAGAGTAGATTATTGGGATCAAGAGACATTCATTAAGGGGGTTTTAGAGTTAGCAGATGATGCTAACTCATTGCCTGCATTACTCATCAATGAAACAAGCAAAAGGAAGAAGGTTACCCTTGTCCTTGATTTGGATGAAACGCTGATCCATTCTTCCATGGGGCAATGCGATGGTGCGGCTGACTTCACATTTAAGATGATCACAGACAGGGAGTTGACTGTATATGTACGAAAGAGGCCCTTTCTCCAAGAATTTTTGGTGAAAGTATCGGAGATGTTTGAAATCATCATTTTCACAGCTAGTAAACGCATGTATGCTGAAACATTGCTTGATGTTCTTGATCCTGATAAAAAGTTTTTTTCTCGACGAGTGTACCGAGAATCATGCACCTGGAAAGATCGCCGCTGCGTCAAGGATTTGACAGTTCTTGGAATTGACCTGGCAAAAGTATGCATAATCGACAACACTCCAGAGGTATTCAGGTTTCAAGTTAACAATGGGATTCCTATCAAAAGTTGGTTTGACGACCCCACTGACTCTGCTTTGATGTCTTTGCTCCCCTTTCTTGAGAAACTGGTTGATGTGGATGATGTTCGCCCCCTTATTGCAGAGAAATTTGGGGCAAGGACTTAA

Predicted protein sequences of Glyma.04G128700

Limit To All Plant Sequences

>Glyma.04g128700.1.p sequence-type=predicted peptide transcript=Glyma.04g128700.1 locus=Glyma.04g128700 ID=Glyma.04g128700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAVKMKAKAIATCKKDGSYPHVSQNSNKISKSTVVRVTNELVNLAISSQTSQNDFCKNEEYSMDLDNKGDMGQPSLSFNGCTDSMEQTDISFNGCTDSVVARDSLSSSLSPDSEAILPYNGLNYAHCQQFETVNREQFTWEPQLDDNFFSTFQMFDLDSAYETGFPIDGLTLFDDSQSYYNLSDLLFPGTNFTIHGTEENMEYPTLKETIGAADFTFGGSSIGFQQTSDSSWVNHLMCHQAIPFTEELSVISSEISSDRVDYWDQETFIKGVLELADDANSLPALLINETSKRKKVTLVLDLDETLIHSSMGQCDGAADFTFKMITDRELTVYVRKRPFLQEFLVKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRVYRESCTWKDRRCVKDLTVLGIDLAKVCIIDNTPEVFRFQVNNGIPIKSWFDDPTDSALMSLLPFLEKLVDVDDVRPLIAEKFGART*

>Glyma.04g128700.2.p sequence-type=predicted peptide transcript=Glyma.04g128700.2 locus=Glyma.04g128700 ID=Glyma.04g128700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLDNKGDMGQPSLSFNGCTDSMEQTDISFNGCTDSVVARDSLSSSLSPDSEAILPYNGLNYAHCQQFETVNREQFTWEPQLDDNFFSTFQMFDLDSAYETGFPIDGLTLFDDSQSYYNLSDLLFPGTNFTIHGTEENMEYPTLKETIGAADFTFGGSSIGFQQTSDSSWVNHLMCHQAIPFTEELSVISSEISSDRVDYWDQETFIKGVLELADDANSLPALLINETSKRKKVTLVLDLDETLIHSSMGQCDGAADFTFKMITDRELTVYVRKRPFLQEFLVKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRVYRESCTWKDRRCVKDLTVLGIDLAKVCIIDNTPEVFRFQVNNGIPIKSWFDDPTDSALMSLLPFLEKLVDVDDVRPLIAEKFGART*

>Glyma.04g128700.3.p sequence-type=predicted peptide transcript=Glyma.04g128700.3 locus=Glyma.04g128700 ID=Glyma.04g128700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPAVKMKAKAIATCKKDGSYPHVSQNSNKISKSTVVRVTNELVNLAISSQTSQNDFCKNEEYSMDLDNKGDMGQPSLSFNGCTDSMEQTDISFNGCTDSVVARDSLSSSLSPDSEAILPYNGLNYAHCQQFETVNREQFTWEPQLDDNFFSTFQMFDLDSAYETGFPIDGLTLFDDSQSYYNLSDLLFPGTNFTIHGTEENMEYPTLKETIGAADFTFGGSSIGFQQTSDSSWVNHLMCHQAIPFTEELSVISSEISSDRVDYWDQETFIKGVLELADDANSLPALLINETSKRKKVTLVLDLDETLIHSSMGQCDGAADFTFKMITDRELTVYVRKRPFLQEFLVKVSEMFEIIIFTASKRMYAETLLDVLDPDKKFFSRRVYRESCTWKDRRCVKDLTVLGIDLAKVCIIDNTPEVFRFQVNNGIPIKSWFDDPTDSALMSLLPFLEKLVDVDDVRPLIAEKFGART*

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