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Report for Sequence Feature Glyma.04G022100

Feature Type:gene_model
Chromosome:Gm04
Start:1728744
stop:1731095
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G35900.1AT Basic-leucine zipper (bZIP) transcription factor family protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI N/AIEA
PTHR22952:SF45Panther JGI N/AIEA
PF00170PFAM bZIP transcription factor JGI N/AIEA

LocusGene SymbolProtein Name
BZIP46 bZIP transcription factor bZIP46
FDL04 Flowering Locus D-like gene 4
FDc1 Flowering Locus D
bZIP30 Basic leucine zipper transcription factor-like protein gene 30

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.06g022300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.04g022100 Wm82.a4.v1ISS As supplied by JGI
Glyma04g02420 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.04g022100.1 sequence-type=CDS polypeptide=Glyma.04g022100.1.p locus=Glyma.04g022100 ID=Glyma.04g022100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCTCATGGCCACCCAAACCTACAGAGATTTTTTGTGTGCATGCGAGGGAGAAAGCGATGGCCTCATCGCCATGTGATTGCTGGCCCCATCTCTCTCCTCCTTCTTCCATTGAGCATGTCTGGAACGACATCAAACTCGACTCTCTCTCCAATTCCCCTGTTGACATAGACTTCAACAACAACCACTCTGTCTCTGATTCTTCTTTTCTTAACCTCACTTCCACTTCCTCTTCTGTCTTTCACAAACATGACCATGACCACTCTCTTCTTTCTGTCTCCAACACTTCCTTCGAAGCCTCCGGCTCTAAGAAAACCACCCTGCTAGATCAACGCCATGCGCGTATAATAAAAAATCGAGAATCCGCGGTTCGGTCCAGAGCTAGAAAACAGGCTTATAGAAAAGGCTTGGAAGTTGAAATTGCCCGTTTAACGGAAGAGAATTCCAGACTAAAAAGACAATTGAAAGAGTTGCAGTGCTGCTTGTCCTCCTCTGATAACCCTCCCACTCCCAGAATGGCCGCTCTGTGTAGAACCTCATCATCTCCATTTTGA

>Glyma.04g022100.1.p sequence-type=predicted peptide transcript=Glyma.04g022100.1 locus=Glyma.04g022100 ID=Glyma.04g022100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASWPPKPTEIFCVHAREKAMASSPCDCWPHLSPPSSIEHVWNDIKLDSLSNSPVDIDFNNNHSVSDSSFLNLTSTSSSVFHKHDHDHSLLSVSNTSFEASGSKKTTLLDQRHARIIKNRESAVRSRARKQAYRKGLEVEIARLTEENSRLKRQLKELQCCLSSSDNPPTPRMAALCRTSSSPF*







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