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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G01220.1 | AT | L-fucokinase/GDP-L-fucose pyrophosphorylase | JGI | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0042352 | GO-bp | GDP-L-fucose salvage | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016772 | GO-mf | transferase activity, transferring phosphorus-containing groups | EnsemblGenomes | N/A | IEA |
| GO:0016772 | GO-mf | transferase activity, transferring phosphorus-containing groups | JGI | N/A | IEA |
| GO:0050201 | GO-mf | fucokinase activity | EnsemblGenomes | N/A | IEA |
| PTHR15045 | Panther | FUCOSE-1-PHOSPHATE GUANYLTRANSFERASE | JGI | N/A | IEA |
| PF00288 | PFAM | GHMP kinases N terminal domain | JGI | N/A | IEA |
| PF07959 | PFAM | L-fucokinase | JGI | N/A | IEA |
| PF08544 | PFAM | GHMP kinases C terminal | JGI | N/A | IEA |
| PWY-6 | SoyCyc9 | GDP-L-fucose biosynthesis II (from L-fucose) | Plant Metabolic Network | ISS | |
| GN7V-62448 | SoyCyc9-rxn | fucose-1-phosphate guanylyltransferase | Plant Metabolic Network | ISS |
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Glyma.03g259000 not represented in the dataset |
Glyma.03g259000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g257700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g42000 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g259000.1 sequence-type=CDS polypeptide=Glyma.03g259000.1.p locus=Glyma.03g259000 ID=Glyma.03g259000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGAGGGAGAGGGGTAAGAGGTGGTGGAAGGTGAAACAGAAGGAGGACTTGGCATCCCTCCTACGGAAATCATGGTACCATCTGAGGTTGTCGGTGCGAGACCCGTGTCGGGTTCCAACGTGGGATGCCATTTTGCTTACCGCCGCTAGCCCAGAACAAGCTCAGCTGTACAACTGGCAGCTGGAGCGGGCCAAGCGCATGGGTCGGATCTCTGCCTCCACCTTCACCCTCGCCGTCCCCGACCCCCTCGGCCAAAGGATCGGATCCGGCGCCGCCACTCTCAATGCCATCCACGCCCTCTCTCACTGCATTAATCATGGAAGTGATATTGATGTTTCTCTTTTGGCCAGGAAGCATATACTGTTGCTGCATGCTGGAGGTGATTCCAAACGGGTTCCGTGGGCAAATCCTATGGGGAAAGTGTTTCTGCCGCTTCCTTATTTGGCTTCAGATGATACCGATGGTCCCGTTCCCCTCCTCTTCGACCATATACTTGCTATTGCTTCTCGTGCAAGACAAGCTTTTGGAAATCAAGGTGGAATGCTAACCATGACTGGTGATGTACTCCCATGTTTTGATGCATCCCTTATGACTCTTCCTGTGGATACTTCTTGCATCATCACTGTTCCAATCACTCTTGATGTTGCTGCAAACCATGGAGTAATTGTTGCGGCTGAAACTGAGCATTCAACTCAAACTTATGCAGTCAGTTTAGTAGACAATCTCCTGCAGAAACCTTCTGTAGATGAGCTAGTTAAAAGTAAGGCAGTTTTAGCTGATGGTAGAACACTTCTTGATACTGGAATAATAGCAGTTAGAGGTAAGGCATGGTTGGAGCTTGTTACACTCGCATGTTCCTGCCAGCAAATGATTTCAGAGCTCCTGCAGAGCAAAAAAGAGATGAGTTTATATGAAGATCTGATTGCTGCCTGGGTACCTGCAAAGCATGAGTGGCTGAGAAAGCGTCCTTTGGGTGAAGAACTAGTCAATAAATTGGGAAAGAGGAAGATGTTCAGCTACCGTGCTTATGACTTGTTGTTCTTGCATTTTGGCACCTCAAATGAAGTTTTAGATCACCTCAGTGGTGTTGGTTCAGAACTGGTTGGTAGAAGACATTTATGTTCTATTCCAGCAACCACTGCATCTGACATTACAGCATCTGCTATTATTATTTCTAGTAAAATTGCACCCGGTGTCTCAATTGGAGAAGATTCTCTCATATATGATTCATCCATCTGTGGTGGAATACATATTGGCTCCTTATGTATAGTGGTTGGTGTGAATATCTCTCTAGACAACTTTTTAAGTGTTGAAAAATCAATCAAGTTCATGCTTCCAGATCGCCATTGTCTTTGGGAGGTTCCCTTGATTGGAAATAGGGAGCGAGTCCTAGTATATTGTGGCCTTCATGATAACCCCAAAAGTTCACTTTCTAAAGATGGTACGTTTTGTGGGAAACCTTGGAAGAAAATTTTACATGATTTGGGTATTCAAGAAAGTGATTTATGGGGCTCCTCAGGCCCTGATGAAAAGTATTTATGGAATTCCAAAATTTTCCCCATACTTCCTTATGCCCAAATGATCGAGGTAGCAATGTGGTTGATGGGCTTAGCCAATGAAAAAAGTGAATCCATGCTTCCTTTATGGAAATATTCTCAGCGCATCAGTTTGGAGGAATTGCATAGATCAATTGATTTTTCAACAATATGTATAGATTCTAGTAATCATCAAGCTGATCTTGCGGCGGGAATTGCAAAAGCTTGCATCAGCTATGGAATGCTGGGGCGCAATTTGTCACAGTTATGCGAAGAAATTCTTCAAAAGAAGGGTCCTGGAGTTGAGATATGTAAGGAATTCCTAGCTATGTGTCCAATAGTCAGGAAGCAAAACTCTAATATACTTCCCCAAAGCCGGGCATACCAGGTGGAAGTTGATCTTCTTCGTGCTTGCAATGATGAAGGGACAGCATGCAAGTTGGAGCACAAAGTTTGGGCTGCTGTGGCTGATGAAACTGCGTCAGCAGTAAGATATGGATTCAAAGAACATTTATCAGAGTCTCCTGGTAGCCTTTCCTGTCAGGAGTTCCAGAATAACCAACATGATAACTGCACTCATCTGCCTTTCCATCCTAGAAGGGTAGAAGTAGAATTACCAGTTCGTGTAGATTTTGTTGGGGGTTGGAGTGATACCCCTCCATGGAGCATTGAACGTGCTGGATGTGTTTTGAATATGGCAATAAGCTTGGAAGGTTTTCAGCCAATTGGCACCATCATAGAGACAACTAAAACAGAAGGAATATTATTTACTGATGATGCAGAGAACCAATTATTTGTTGAAGATTATACATCTATTTGTGCACCGTTTGATGGAGATGATCCATTTCGGCTGGTCAAATCTGCATTACACGTGACTGGAATTATTCATGATAACATTCTTGTAGATATGGGCATGCACATCAAAACATGGGCCAATGTCCCCCGGGGCAGTGGATTGGGTACTTCTAGTATCTTGGCTGCTGCAGTGGTGAAAGGGCTTCTCCAAGTAATTGATGGGGATGATAGCACTGAGAACGTTGCTAGACTTGTTTTAGTGTTAGAACAACTTATGGGTACAGGAGGTGGCTGGCAGGACCAAATAGGGGGTTTGTACCCAGGGATTAAATGTACTTCAAGCTTTCCTGGAATTCCACTTCGGCTTCAAGTTGTCCCTCTGTTGGCTTCACCTCAGTTGATTTCCAAGTTGCAGCAACGGCTTCTTGTGGTATTTACTGGTCAAGTTCGACTTGCACATAAGGTGCTGCAGAAGGTGGTTGTTAGATATCTTCGCCGTGATAACCTTCTTGTATCGAGTATCAAGCGCCTTGTTGAACTGGCTAAGATTGGGAGAGAAGCTTTGATGAACTGTGACGTAGATGAACTTGGTGAGATCATGCTGGAGGCTTGGAGATTGCATCAGGAACTTGACCCTTACTGCAGCAATGAGTTTGTTGACAGACTATTTTCTTTTGCCACTCCTTACTGCTGTGGCTACAAGCTGGTTGGAGCTGGTGGTGGGGGCTTTGCTCTGTTACTTGCCAAAGATGCACAGCTTGCCAAGGAACTGAGACAGAGACTAGAAGATGACAAACATTTTGAAGTGAAAGTATATGATTGGCAGATATTCCTATAG
>Glyma.03g259000.1.p sequence-type=predicted peptide transcript=Glyma.03g259000.1 locus=Glyma.03g259000 ID=Glyma.03g259000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MERERGKRWWKVKQKEDLASLLRKSWYHLRLSVRDPCRVPTWDAILLTAASPEQAQLYNWQLERAKRMGRISASTFTLAVPDPLGQRIGSGAATLNAIHALSHCINHGSDIDVSLLARKHILLLHAGGDSKRVPWANPMGKVFLPLPYLASDDTDGPVPLLFDHILAIASRARQAFGNQGGMLTMTGDVLPCFDASLMTLPVDTSCIITVPITLDVAANHGVIVAAETEHSTQTYAVSLVDNLLQKPSVDELVKSKAVLADGRTLLDTGIIAVRGKAWLELVTLACSCQQMISELLQSKKEMSLYEDLIAAWVPAKHEWLRKRPLGEELVNKLGKRKMFSYRAYDLLFLHFGTSNEVLDHLSGVGSELVGRRHLCSIPATTASDITASAIIISSKIAPGVSIGEDSLIYDSSICGGIHIGSLCIVVGVNISLDNFLSVEKSIKFMLPDRHCLWEVPLIGNRERVLVYCGLHDNPKSSLSKDGTFCGKPWKKILHDLGIQESDLWGSSGPDEKYLWNSKIFPILPYAQMIEVAMWLMGLANEKSESMLPLWKYSQRISLEELHRSIDFSTICIDSSNHQADLAAGIAKACISYGMLGRNLSQLCEEILQKKGPGVEICKEFLAMCPIVRKQNSNILPQSRAYQVEVDLLRACNDEGTACKLEHKVWAAVADETASAVRYGFKEHLSESPGSLSCQEFQNNQHDNCTHLPFHPRRVEVELPVRVDFVGGWSDTPPWSIERAGCVLNMAISLEGFQPIGTIIETTKTEGILFTDDAENQLFVEDYTSICAPFDGDDPFRLVKSALHVTGIIHDNILVDMGMHIKTWANVPRGSGLGTSSILAAAVVKGLLQVIDGDDSTENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKCTSSFPGIPLRLQVVPLLASPQLISKLQQRLLVVFTGQVRLAHKVLQKVVVRYLRRDNLLVSSIKRLVELAKIGREALMNCDVDELGEIMLEAWRLHQELDPYCSNEFVDRLFSFATPYCCGYKLVGAGGGGFALLLAKDAQLAKELRQRLEDDKHFEVKVYDWQIFL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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