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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G46500.1 | AT | phosphoinositide 4-kinase gamma 4 | JGI | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| GO:0016301 | GO-mf | kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016773 | GO-mf | phosphotransferase activity, alcohol group as acceptor | JGI | N/A | IEA |
| KOG2381 | KOG | Phosphatidylinositol 4-kinase | JGI | N/A | IEA |
| PTHR15245 | Panther | SYMPLEKIN-RELATED | JGI | N/A | IEA |
| PTHR15245:SF11 | Panther | PHOSPHATIDYLINOSITOL 3-KINASE-RELATED PROTEIN KINASE | JGI | N/A | IEA |
| PF00240 | PFAM | Ubiquitin family | JGI | N/A | IEA |
| PF00454 | PFAM | Phosphatidylinositol 3- and 4-kinase | JGI | N/A | IEA |
| PWY-6351 | SoyCyc9 | D-myo-inositol (1,4,5)-trisphosphate biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6352 | SoyCyc9 | 3-phosphoinositide biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-64708 | SoyCyc9-rxn | 1-phosphatidylinositol 4-kinase | Plant Metabolic Network | ISS |
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Glyma.03g257600 not represented in the dataset |
Glyma.03g257600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g256100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g41850 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g257600.1 sequence-type=CDS polypeptide=Glyma.03g257600.1.p locus=Glyma.03g257600 ID=Glyma.03g257600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCATCAGCTGGTGTCTCTACACTTACTGTGGTTCCCACTGAGCCATTGTTGTCACCAAAGGCATTCCCTTTTCCAATTCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGCTCATTGACTCCCATCCGTGTTATGGAGTGGGATACCATTGAATCTGTCAAATTCAAAATCCAAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTTGCGCGAAGTGATACGCCGCTCAAGGACTATGGAGTAACGGATGGAAATGTTTTGCATTTGGTAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTTCTTGTGGGAAGGAGTTCACGTTTCAGGTCGAACGAGGCAGGGATGTCGGGTACATAAAGCAGCGGATCGCCAGAAGGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGATATCTGTTGCAAACATAATGATGCAGCAGTCCATCTGTTTGTGAGAAAAAAGCATGTTAAAGTTCAGAGGAGACCCCTTGAGTTGTCCATTGTAGCAAAAGATTTGATTGATAAGAAAAAAAATGATGTCAATGGAAATACTAATCGGAGAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTCTGATGTCATTCAAAGAGCTGTGCCGAGAAAGCCTCCTGGTAGAGATTTTATTTTGGAGCCAGTTATTATTAACCATAAAATTGAATTAGCTCCAGCTATTCGGAATATGGTGAACTCTACATATGAGGGACTTGGCAGTGGAAAATGTCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGCAGAGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAACCAATGGCTGTGAATAACCCTCGAGGTCTTCCTTTGTCATTAGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTAGCAGCCTATGTTCTAGACCATCCATTGAGTGGGTGCCAGCGCCACTCATTATTTGGTGATGGGAAGGGCTTTGCTGGTGTTCCCCCAACATTGATGGTTAAGTGCTTGCATAAAGCATTCAACTATCCCCGAGAATTGACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCGGGGGCTTTCCCAGTAAAGGAGGTACATAAAATTACTGTTTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAGGACAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGCACCTTTGAATGGCTTTACTGGCCTCAAGCTCGCCAGCCATACTCCTCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGACATTGCCCTTTTGAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCTTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAGGAATCTGTGATAGAAGAAGTAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATTCTGTTTCCCAAATCCTGGACTTGCACCTCGATGAGATTGTCAGATCTCATTTATAA
>Glyma.03g257600.1.p sequence-type=predicted peptide transcript=Glyma.03g257600.1 locus=Glyma.03g257600 ID=Glyma.03g257600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSAGVSTLTVVPTEPLLSPKAFPFPIPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIQRCESLPFLTNKQKLVYAGRELARSDTPLKDYGVTDGNVLHLVIKLSDLQVINVKTSCGKEFTFQVERGRDVGYIKQRIARREKQFDDPEEQELVCNGERLEDQRLIDDICCKHNDAAVHLFVRKKHVKVQRRPLELSIVAKDLIDKKKNDVNGNTNRRSYDVGKEDTIRKSDVIQRAVPRKPPGRDFILEPVIINHKIELAPAIRNMVNSTYEGLGSGKCPIRSAEGTGGAYFMLDSAEQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYVLDHPLSGCQRHSLFGDGKGFAGVPPTLMVKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISKEEDNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSSETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGSLMCRESLNKESVIEEVVQAALDSVLPGTSEATLLDSVSQILDLHLDEIVRSHL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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