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Report for Sequence Feature Glyma.03g256800

Feature Type:gene_model
Chromosome:Gm03
Start:45159126
stop:45165284
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g256800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G01040.1AT Glycosyl hydrolase superfamily protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006032GO-bp chitin catabolic process EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004568GO-mf chitinase activity EnsemblGenomesN/AIEA
GO:0008061GO-mf chitin binding EnsemblGenomesN/AIEA
KOG2091 KOG Predicted member of glycosyl hydrolase family 18 JGI N/AIEA
PTHR11177Panther CHITINASE JGI N/AIEA
PTHR11177:SF6Panther SUBFAMILY NOT NAMED JGI N/AIEA
PF00704PFAM Glycosyl hydrolases family 18 JGI N/AIEA

Expression Patterns of Glyma.03g256800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g256800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g41760 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g256800
>Glyma.03g256800.2 sequence-type=transcript locus=Glyma.03g256800 ID=Glyma.03g256800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACGATAGGAGGCACTACGCTGTCGTTTGCGGTGTTAGAAGACCTAGTCGGGCGTGATGGCGAAGAAGCGATCAGCCCCGAGTGGCGGTCGTCGGGAAAACCGAGCCGAATCATCTTCCCGACGGCTCAACTCAGCTTCCGGTCGCAGAAAACTCGTTGCGTTCTtcatcgtatcgtccatcatcgctatcgtcacttatcgttatcGCTTCAGACAATCTTCTCCTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACATTTATCACCCATTTGGTATGATCTAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCATTCTATAAGCTCAGAGAAAATTAGTGGGCAGCAGCTGCAGTTGGTCTATGTTATAGGTTCACCTTCTGAGAAGTTGCAAGAGCATGATTTTGGTCCTAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGATTTCTCTAATCCTCATAATCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTGTTCTACAGCTGCTTCTCGGTACCTCTGGCAATAGAGCCCAAAGCCTTGCCCCCAAGATACTTCTTGGTATCAACTTCTATGGAAATGATTTCTCCCTTTCAAGGGATGCAGGGGGTGGAGCTATTATTGGGAGAGATTACCTGGCACTTTTGGAGAAGCACTGGCCTGAACTGCAGTGGGATAAGAATAGTGGGGAGCATTTTTTCTTTTACACTGACGACAAGGATATCAGGCATGTGGTATTTTATCCATCTTTGAAGTCAATTTCTTTGCGGTTAGAGGAAGCTCGTTCATGGGGATGTGGCATCTCGATCTGGGAAATTGGCCAAGGTCTGGATTATTTTTTTGACCTTCTGTGATAGCTTGTTATGTGTACTTCTTTTGTGGCCCATGTTAATGTTTATTCCTACGTCGTAATGTTGTGTATTCAGTATAATCGAAACGTACTTCAGTTAAATTGGGATTTTGTTTTTCAGAAATCTAGTTTGAGGAAATGTGCAGTTAGTTCACTTACGTGACAGCATAGAGGATATTTGAGAACGTAATAAAAATGCCA
Coding sequences of Glyma.03g256800
>Glyma.03g256800.1 sequence-type=CDS polypeptide=Glyma.03g256800.1.p locus=Glyma.03g256800 ID=Glyma.03g256800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAGAAGCGATCAGCCCCGAGTGGCGGTCGTCGGGAAAACCGAGCCGAATCATCTTCCCGACGGCTCAACTCAGCTTCCGGTCGCAGAAAACTCGTTGCGTTCTTCATCGTATCGTCCATCATCGCTATCGTCACTTATCGTTATCGCTTCAGACAATCTTCTCCTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACATTTATCACCCATTTGGTATGATCTAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCATTCTATAAGCTCAGAGAAAATTAGTGGGCAGCAGCTGCAGTTGGTCTATGTTATAGGTTCACCTTCTGAGAAGTTGCAAGAGCATGATTTTGGTCCTAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGATTTCTCTAATCCTCATAATCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTGTTCTACAGCTGCTTCTCGGTACCTCTGGCAATAGAGCCCAAAGCCTTGCCCCCAAGATACTTCTTGGTATCAACTTCTATGGAAATGATTTCTCCCTTTCAAGGGATGCAGATGCAGGGGGTGGAGCTATTATTGGGAGAGATTACCTGGCACTTTTGGAGAAGCACTGGCCTGAACTGCAGTGGGATAAGAATAGTGGGGAGCATTTTTTCTTTTACACTGACGACAAGGATATCAGGCATGTGGTATTTTATCCATCTTTGAAGTCAATTTCTTTGCGGTTAGAGGAAGCTCGTTCATGGGGATGTGGCATCTCGATCTGGGAAATTGGCCAAGGTCTGGATTATTTTTTTGACCTTCTGTGA

>Glyma.03g256800.2 sequence-type=CDS polypeptide=Glyma.03g256800.2.p locus=Glyma.03g256800 ID=Glyma.03g256800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAGAAGCGATCAGCCCCGAGTGGCGGTCGTCGGGAAAACCGAGCCGAATCATCTTCCCGACGGCTCAACTCAGCTTCCGGTCGCAGAAAACTCGTTGCGTTCTTCATCGTATCGTCCATCATCGCTATCGTCACTTATCGTTATCGCTTCAGACAATCTTCTCCTTCGCAAGGCCTTGTCACAACTCATGCTAATTGCCAACATATACTCGCCGAAAATTCAAAAGTATCAGGAAATTCGTCTCAGCGCCATTATACTTATCCTGTGCTTGGCTACATTACTCCCTGGAATTCTCGAGGTTATGAATTGGCAAAAAGGTTCAACTCTAAGTTCACACATTTATCACCCATTTGGTATGATCTAAAGAGCCAACAGACTAGCTTAGTTCTAGAGGGGAGACATAATGCTGACAGAGGATGGATCTCAGAGCTTAAAAAGGCAGGAGAAGCTTTGATTTTGCCTAGAGTTGTTCTGGAAGCATCACCAGCAGTGCTGTTGGGAAAGGAAAAACAAAGGAACAAAGCCATTAACCTTATAGTAACAGAGTGCAAGGAAATGGGATATGATGGTATTGTTTTGGAATCTTGGTCAAGGTGGGCAGCTTATGGTATCTTGCATGATCCAAGCATGCGGAATTTGGCATTGCAGTTTGTAAAACAGCTTGGAGATGCACTGCATTCTATAAGCTCAGAGAAAATTAGTGGGCAGCAGCTGCAGTTGGTCTATGTTATAGGTTCACCTTCTGAGAAGTTGCAAGAGCATGATTTTGGTCCTAAAGATCTTGAGACTTTAAGTGAAGCTGTGGATGGATTCTCGTTAATGACATATGATTTCTCTAATCCTCATAATCCTGGTCCTAATGCACCTTTGAAATGGATTCAAATTGTTCTACAGCTGCTTCTCGGTACCTCTGGCAATAGAGCCCAAAGCCTTGCCCCCAAGATACTTCTTGGTATCAACTTCTATGGAAATGATTTCTCCCTTTCAAGGGATGCAGGGGGTGGAGCTATTATTGGGAGAGATTACCTGGCACTTTTGGAGAAGCACTGGCCTGAACTGCAGTGGGATAAGAATAGTGGGGAGCATTTTTTCTTTTACACTGACGACAAGGATATCAGGCATGTGGTATTTTATCCATCTTTGAAGTCAATTTCTTTGCGGTTAGAGGAAGCTCGTTCATGGGGATGTGGCATCTCGATCTGGGAAATTGGCCAAGGTCTGGATTATTTTTTTGACCTTCTGTGA
Predicted protein sequences of Glyma.03g256800
>Glyma.03g256800.1.p sequence-type=predicted peptide transcript=Glyma.03g256800.1 locus=Glyma.03g256800 ID=Glyma.03g256800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKKRSAPSGGRRENRAESSSRRLNSASGRRKLVAFFIVSSIIAIVTYRYRFRQSSPSQGLVTTHANCQHILAENSKVSGNSSQRHYTYPVLGYITPWNSRGYELAKRFNSKFTHLSPIWYDLKSQQTSLVLEGRHNADRGWISELKKAGEALILPRVVLEASPAVLLGKEKQRNKAINLIVTECKEMGYDGIVLESWSRWAAYGILHDPSMRNLALQFVKQLGDALHSISSEKISGQQLQLVYVIGSPSEKLQEHDFGPKDLETLSEAVDGFSLMTYDFSNPHNPGPNAPLKWIQIVLQLLLGTSGNRAQSLAPKILLGINFYGNDFSLSRDADAGGGAIIGRDYLALLEKHWPELQWDKNSGEHFFFYTDDKDIRHVVFYPSLKSISLRLEEARSWGCGISIWEIGQGLDYFFDLL*

>Glyma.03g256800.2.p sequence-type=predicted peptide transcript=Glyma.03g256800.2 locus=Glyma.03g256800 ID=Glyma.03g256800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKKRSAPSGGRRENRAESSSRRLNSASGRRKLVAFFIVSSIIAIVTYRYRFRQSSPSQGLVTTHANCQHILAENSKVSGNSSQRHYTYPVLGYITPWNSRGYELAKRFNSKFTHLSPIWYDLKSQQTSLVLEGRHNADRGWISELKKAGEALILPRVVLEASPAVLLGKEKQRNKAINLIVTECKEMGYDGIVLESWSRWAAYGILHDPSMRNLALQFVKQLGDALHSISSEKISGQQLQLVYVIGSPSEKLQEHDFGPKDLETLSEAVDGFSLMTYDFSNPHNPGPNAPLKWIQIVLQLLLGTSGNRAQSLAPKILLGINFYGNDFSLSRDAGGGAIIGRDYLALLEKHWPELQWDKNSGEHFFFYTDDKDIRHVVFYPSLKSISLRLEEARSWGCGISIWEIGQGLDYFFDLL*






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