Glyma.03g247300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.03g247300

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44401854
stop:	44411153
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g247300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04740.1	AT	RNA polymerase II transcription mediators	JGI	N/A	IEA
GO:0006357	GO-bp	regulation of transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0006357	GO-bp	regulation of transcription from RNA polymerase II promoter	JGI	N/A	IEA
GO:0016592	GO-cc	mediator complex	EnsemblGenomes	N/A	IEA
GO:0016592	GO-cc	mediator complex	JGI	N/A	IEA
GO:0070847	GO-cc	core mediator complex	EnsemblGenomes	N/A	IEA
GO:0003712	GO-mf	transcription cofactor activity	EnsemblGenomes	N/A	IEA
KOG1875	KOG	Thyroid hormone receptor-associated coactivator complex component (TRAP170)	JGI	N/A	IEA
PTHR12809	Panther	MEDIATOR COMPLEX SUBUNIT	JGI	N/A	IEA
PTHR12809:SF2	Panther	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 14	JGI	N/A	IEA
PF08638	PFAM	Mediator complex subunit MED14	JGI	N/A	IEA

Proteins Associated with Glyma.03g247300

Locus	Gene Symbol	Protein Name
	MED14-1	Mediator Complex 14 gene 1

Expression Patterns of Glyma.03g247300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g247300

Paralog	Evidence	Comments
Glyma.19g245100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g247300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g40750	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.03g247300

Limit To All Plant Sequences

>Glyma.03g247300.1 sequence-type=CDS polypeptide=Glyma.03g247300.1.p locus=Glyma.03g247300 ID=Glyma.03g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGCCGAGTTAGGGCAACAGACGGTGGAGCTCTCCACCCTCGTTACACGCGCAGCTAATGATTCCTATGCCTCTCTCAAAGAACTCGTCGATAAATGCAAGTCCTCTGAATTATCCGACACGGACAAGAAGATTAGCATCCTCAAATTCCTCAGCAAGACTCAGCAGCGCATGATCCGCCTCAATGTCCTCTCCAAGTGGTGCCAACAGGTTCCTTTAATACACCACTGTCAGCAACTGGCTTCGACTGTTTCAAATCACGACATGTGTTTCACGCAAGCTGCTGATTCGTTATTCTTTATGCACGAGGGGCTTCAACAGGCGCGTGCCCCCGTTTACGATGTACCTTCCGCCATTGATATTCTTCTCACCGGAAGTTACCAGCGTTTGCCCAAATGTATAGAGGATGTGGGGACTCAGTATGCTTTGACCGAGGAACAGCAGAAACCTGCTTTGAAGAAGCTGGACACGCTTGTTCGGTCCAAATTGCTTCAGGTTTCTATTCCCAAAGAGTTTTCCAATATTATGGTTTCTGATGGTACCGCAATGCTTAGGTTAGATGGGGAGTTTAAGGTTTTGATAACGCTTGGGTATAGAGGGCACTTGTCTTTGTGGAGGATTTTGCATTTGGAGCTGCTTGTTGGTGAGAAGGATAAGCCTGTGAAATTGGAGGCAACACGACGTCACTTGCTTGGGGATGATTTGGAGAGGCGAATGGCAGCGGCAGAAAATCCATTTTCGGTGTTGTACTCTGTTCTCCATGAGCTGTGTGTTGCACTTGTCATGGACACGGTCATAAGGCAAGTGCAGGTTCTTCGACAGGGAAGGTGGAAGGATGCAATTCGGTTTGAGCTCATATCTGAGGGGCATGGAGCGAGTTCTAGCTCTGCGCTGAACCCTGATGGGGAATCTGATTCGTCTGCCATGCGAACTCCAGGGTTGAAAATTGTGTACTGGTTGGATTTTGATAAGAATGCTGGTGCGTCTGAATCGGGCACATGCCCATTTCTCAAAATTGAACCAGGGTCAGATCTTCAGATAAAGTGTCTCCACAGCAGCTTTGTCATAGATCCCTTGATGGGCAAGGAGGCAGAGTTTGTTTTGGACCAGAGTTGTATCGATGTTGAGAGGTTGCTGTTGAGAGCTATTTGTTGCAACAAATATACCCGTCTATTGGAAATTAAAAGAGAGCTGGTAAAAAATGTTCAGGTCTGTAGAACCGCAGATGATGTTGTGCTCCAGTCTCAAATGGGTGAACTTGATATTGAATATAAACAGAAGGATGATAAGTGCTGCAGCAAGGACTCTGAGGGCCATGAGGTTTTGTGTGTGCGTGCCTATGGCTCTTCTTTTTTCACTCTTGGAATTAATATAAGGAATGGCCGTTTTCTTCTTCAATCTTCTCAAAACATAGTGGTTTCTTCCGCTTTATTAGAATGTGAAGAAGCTTTGAATCAGGGATCTATGACTGCAGCTGAGGTCTTCATAAGCCTGAGAAGCAAAAGTCTATTGCACTTATTTGCATCTATTGGAAGGGTTTTAGGCCTTGAGGTATATGAGCATGAATTCAATACAGTTAAAATACCCAAGAATGTTTCAAATGGTTCAGCTATGCTATTGATGGGATTTCCCGACTGTGGAAGTTCTTACTTCCTGCTGATGCAACTTGATAAGGATTTCAAACCCTTGTTTAAGTTGTTAGAGACTCAGCCCAACCCATCTGTAAAAGATAATTTATCTGGTGAGCTTAATCAGGTGCTGCGGATCAAGGAAATTGATATAGGACAAATGCAAGTTCATGAAGATGAAATGAATTTAAGCCTGGTTGACTGGGGAAAATTACGCTCTGTTTTGCCCAATGCTGTTTGTCCAAATCAAACATCTGGACATGAGTTTTTTTCTGATATTCGCCTTGAGAATTCCATACAGATTGCAAGAGGTCATCCTTCAGGTTTTTCATCACTTGTTGATGAAGTGTTTGGACTTGAGAAAGGGTCTTCAACGCCTCCATTCTCTGTTAAAAATCTTTCTTCATCTGTGAATACATCCCTTCCTTCCCAATATGGCTCTGTCCCTATGACTCTCCATAGTTTAAAGGCTGGAAGCCCTTCGCCAAAGTGGGAAGTAGGAATGCAGATGCCACTGGTTAGTAATGTAACAAAAGCTTCTAGTGCTACTAACCACTATAGTGGTTCCTTGTTCTCATCAGGCAGTGTGAAGGGCCCAGTTCAGTCCAGTTCTGTTGGCTCAATACCAACTGGACAAGGAAGGAACTCTGCTGGAACAAAGCTATCTGCTTCCAAGTCTGAACAGGATTTGGCTTCTCTTAAATCTCTGCATTCAGTTGACTCTAGTTCCTCTGCTGCAATGGATGAAGAACAGCTAAGAGTGTTCAGTGATAATTCCAACGATGCTTTAGCTGGAAGTCGGTCATCTCGACTTTTATCTCCTCCACGGCCAACTGGCTCTCGAATGTCCATACCTAATTCCAGACCTAATGGACCTCAAGTTGAATCGTTTAAGGCTGCTGGATCTGGTTCATGTGCTACAACTCCCGTATCCCAAACACTGGAATCAACGGTTAGCTATAACACAGGTGAAGATGTTACCTCCAAAAATGATAGGAAATCTGGAAAACGAACAGCTTCGGATATGTTGACCTTGATTCCATCTCTTCAAGGTGTTGAAAGCAACTCGGGAATCTGCAAGAAAAGAAAAATTTCTGATTCAGCTGGCTGTCAACTGTCTTTGCCACAAGGTGTCATGTCCGCTGAAATAATACCCAGAACAGAAGGATACAGTTATGGAAGTTTAATCGCAGAAGCAAATAAAGGGAATGTTCCATCTAGCATTTATGTTGCGGCTCTTCTTCATGTGGTCAGGCATTGTTCACTTTGCATTAAGCATGCTAGACTAACCAGCCAGATGGATGCATTAGACATCTCATATGTTGAAGAAGTGGGTTTGAGAAGTGGATCATCTAACATTTGGTTTCGACTTCCACTTGCTAGAGGTGACTCATGGCAACATATATGTTTGCGACTGGGCAGACCTGGTTGCATGTACTGGGATGTTAAAATAAATGATCAGCACTTCAGGGATTTATGGGAGCTTCAGAAAGGGATCAATAATACACCATGGGGTTCAGGTGTACGAATTGCTAATACATCTGACATAGATTCACATATACATTATGATCCAGATGGTGTTGTTTTGAGTTATCAATCTGTTGAAGTAGATAGTATAAAGAAATTGGTGGCTGATATCCAAAGGCTTGCCAATGCAAGAACATTTGCCCTTGGCATGAGGAAATTGCTTGGCGTAAGAGCAGAGGAGAAGTCAGAAGAGCTAGTTACAAGTTCTGACACCAAAACACCCAGTACCAAGGTTGCTCTGGATACTGCAGACAAACTAACTGAACAGATGAGAAGGGCGTTTAGAATTGAGGCAGTTGGACTGATGAGCTTGTGGTTTAGCTTTGGTTCAGGTGTCCTTGCTCGTTTTGTTGTTGAATGGGAGTCTGGTAAAGAGGGTTGCACTATGCATGTATCTCCTGATCAACTTTGGCCTCATACCAAGTTTCTGGAAGATTTCATAAATGGAGGTGAAGTTTCACCGCTGTTGGATTGCATTCGGCTGACTGCAGGGCCCTTGCATGCTCTGGCAGCTGCAACCCGGCCAGCAAGAGCTGGTCCTGTTCCAGGGGTTGCAGCTGCCTTATCTTCTATTCCTAAACAGAATGGTAGTTATATATCCTCACACGGTCTTCTGCTTAGTAATTCAACTACTAATGTTGGTCTGCCAACATCTGGACCTGGGGCAAACACTGTCATGCCTACTGCTAGTGGTCTCACTAGCCAAACACTTTCAATGTTAGCTGCTTCTGGACGTGGTGGCCCAGGCATTGTTCCAAGTTCACTTTTGCCCATTGATGTTTCTGTTGTGCTCCGCGGTCCATATTGGATACGGATCATGTACAGGAAACAATTTGCTGTTGACATGCGTTGCTTTGCAGGAGATCAGGTGTGGTTGCAGCCTGCAACACCGCCTAAAGAGGGCCGTCTTTCTGGAGGTTCACTGCCTTGCCCCCAGTTTCGGCCTTTTATCATGGAACATGTTGCCCAGGAATTGAATGGATTGGATCCTAGTTTTACTGGACAACAGGCAGGTGGGATGGCAAATTCAAATAATCCAAACCCTGGTTCAGGATCCCAGATGATGGCTGCAAATGGAAATAGAATAAATTTGCCAATTTCTGCTGCAATGCCTAGGACAGGAAACCAAGTAGCTAGTTTAAACCGTGTTGGAAATGCTTTAGCAGGCTCTTCAAACTTAGCTTTGATGACATCAGCTGTCTCTCTACGGAGGCCACCTGGAACGGTTGTCCCTGCACATGTCAGAGGCGAGCTGAACACAGCCATTATTGGTCTTGGTGATGATGGAGGATATGGAGGTGGTTGGGTTCCTCTTGTTGCTCTTAAGAAGGTTTTGAGAGGTATTCTCAAGTATCTTGGAGTGTTATGGCTTTTTGCCCAGTTACCTGAACTTTTGAAAGAGATCCTAGGATCTATTTTGAAGGAAAATGAAGGCGCACTTTTGAATTTGGACCCTGAGCAGCCTGCCTTACGTTTTTTTGTTGGAGGATATGTATTTGCTGTTAGTGTCCACAGAGTTCAGCTTCTTCTTCAGGTATTAAGTGTAAAACGCTTTCACCAACAGCAACAGCAACAGCAGCAAAATTCAAATCCCGCACCAGAGGAATTAAGTCAATCTGAAATAAGTGAAATATGCGACTACTTCAGCCGTCGAGTGGCATCAGAACCCTATGATGCTTCTCGTGTTGCATCATTCATAACTATGCTCACTTTACCTGTGGCAGTACTGAGAGAATTCTTGAAATTAATTGCTTGGAAAAAGGGATTATCGCAGGCACAAGTTGGAGATGTTGTTTCAGCTCAAAAGCCACGGATTGAGTTATGTCTTGAAAATCATTCTGGGTTGAATATGGATGAGAACTCTGAGAGCTCATCTGCATTCAGAAGCAACATCCATTATGATCGCCTGCATAATTCTGTTGATTTTGCGCTTACTGTTGTTCTTGATTCTGCTCACATCCCTCATGTCAATGCTGCTGGTGGTGCTGCATGGTTGCCATACTGTGTTTCGGTAAGATTGAGATATTCATTTGGTGAAAGTCCCAATGTATCATTTATTGGCATGAATGGTAGCCATGGTGGTAGGGCATGTTGGTTACGTGTTGATGATTGGGAAAAATGCAAACAGAGGGTGGCACGAACAGTGGAGGTTAATGGGAACTCAGCAGCAGATGTAAGTCAAGGTAGGCTGAAATTAATTGCAGATAGTGTGCAAAGAAATCTGCATATGTGCATTCAAGGGCTAAGAGATGGTAGTGGGGTCACAACCAGCTCTGGAGCTGCGTGA

Predicted protein sequences of Glyma.03g247300

Limit To All Plant Sequences

>Glyma.03g247300.1.p sequence-type=predicted peptide transcript=Glyma.03g247300.1 locus=Glyma.03g247300 ID=Glyma.03g247300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTAELGQQTVELSTLVTRAANDSYASLKELVDKCKSSELSDTDKKISILKFLSKTQQRMIRLNVLSKWCQQVPLIHHCQQLASTVSNHDMCFTQAADSLFFMHEGLQQARAPVYDVPSAIDILLTGSYQRLPKCIEDVGTQYALTEEQQKPALKKLDTLVRSKLLQVSIPKEFSNIMVSDGTAMLRLDGEFKVLITLGYRGHLSLWRILHLELLVGEKDKPVKLEATRRHLLGDDLERRMAAAENPFSVLYSVLHELCVALVMDTVIRQVQVLRQGRWKDAIRFELISEGHGASSSSALNPDGESDSSAMRTPGLKIVYWLDFDKNAGASESGTCPFLKIEPGSDLQIKCLHSSFVIDPLMGKEAEFVLDQSCIDVERLLLRAICCNKYTRLLEIKRELVKNVQVCRTADDVVLQSQMGELDIEYKQKDDKCCSKDSEGHEVLCVRAYGSSFFTLGINIRNGRFLLQSSQNIVVSSALLECEEALNQGSMTAAEVFISLRSKSLLHLFASIGRVLGLEVYEHEFNTVKIPKNVSNGSAMLLMGFPDCGSSYFLLMQLDKDFKPLFKLLETQPNPSVKDNLSGELNQVLRIKEIDIGQMQVHEDEMNLSLVDWGKLRSVLPNAVCPNQTSGHEFFSDIRLENSIQIARGHPSGFSSLVDEVFGLEKGSSTPPFSVKNLSSSVNTSLPSQYGSVPMTLHSLKAGSPSPKWEVGMQMPLVSNVTKASSATNHYSGSLFSSGSVKGPVQSSSVGSIPTGQGRNSAGTKLSASKSEQDLASLKSLHSVDSSSSAAMDEEQLRVFSDNSNDALAGSRSSRLLSPPRPTGSRMSIPNSRPNGPQVESFKAAGSGSCATTPVSQTLESTVSYNTGEDVTSKNDRKSGKRTASDMLTLIPSLQGVESNSGICKKRKISDSAGCQLSLPQGVMSAEIIPRTEGYSYGSLIAEANKGNVPSSIYVAALLHVVRHCSLCIKHARLTSQMDALDISYVEEVGLRSGSSNIWFRLPLARGDSWQHICLRLGRPGCMYWDVKINDQHFRDLWELQKGINNTPWGSGVRIANTSDIDSHIHYDPDGVVLSYQSVEVDSIKKLVADIQRLANARTFALGMRKLLGVRAEEKSEELVTSSDTKTPSTKVALDTADKLTEQMRRAFRIEAVGLMSLWFSFGSGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGGEVSPLLDCIRLTAGPLHALAAATRPARAGPVPGVAAALSSIPKQNGSYISSHGLLLSNSTTNVGLPTSGPGANTVMPTASGLTSQTLSMLAASGRGGPGIVPSSLLPIDVSVVLRGPYWIRIMYRKQFAVDMRCFAGDQVWLQPATPPKEGRLSGGSLPCPQFRPFIMEHVAQELNGLDPSFTGQQAGGMANSNNPNPGSGSQMMAANGNRINLPISAAMPRTGNQVASLNRVGNALAGSSNLALMTSAVSLRRPPGTVVPAHVRGELNTAIIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPELLKEILGSILKENEGALLNLDPEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHQQQQQQQQNSNPAPEELSQSEISEICDYFSRRVASEPYDASRVASFITMLTLPVAVLREFLKLIAWKKGLSQAQVGDVVSAQKPRIELCLENHSGLNMDENSESSSAFRSNIHYDRLHNSVDFALTVVLDSAHIPHVNAAGGAAWLPYCVSVRLRYSFGESPNVSFIGMNGSHGGRACWLRVDDWEKCKQRVARTVEVNGNSAADVSQGRLKLIADSVQRNLHMCIQGLRDGSGVTTSSGAA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain