SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.03g244800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.03g244800): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.03g244800

Feature Type:gene_model
Chromosome:Gm03
Start:44223088
stop:44228604
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g244800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14880.1AT O-acetylserine (thiol) lyase (OAS-TL) isoform A1 JGI N/AIEA
GO:0006535GO-bp cysteine biosynthetic process from serine EnsemblGenomesN/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0019344GO-bp cysteine biosynthetic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004124GO-mf cysteine synthase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
KOG1252 KOG Cystathionine beta-synthase and related enzymes JGI N/AIEA
PTHR10314Panther SER/THR DEHYDRATASE, TRP SYNTHASE JGI N/AIEA
PTHR10314:SF8Panther CYSTEINE SYNTHASE JGI N/AIEA
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI N/AIEA
CYSTSYN-PWYSoyCyc9 L-cysteine biosynthesis I Plant Metabolic Network ISS
GN7V-67749SoyCyc9-rxn O-acetylserine sulfhydrylase Plant Metabolic Network ISS

Proteins Associated with Glyma.03g244800
LocusGene SymbolProtein Name
OAS-TL1 cysteine synthase

Expression Patterns of Glyma.03g244800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g244800 not represented in the dataset
Glyma.03g244800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g244800
ParalogEvidenceComments
Glyma.19g242300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g244800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g40490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g244800
>Glyma.03g244800.2 sequence-type=transcript locus=Glyma.03g244800 ID=Glyma.03g244800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
tttttttttatctttCTGAATTTCtctcttccgcttttgcttctgcctctgcttTGTATCTCTGTAACTGTGAACTCCTTTTTCTTTATTACTTTGCTTAATATGGCGGTTGAGAAGTTGAGCATTGCAAAAGATGTGACTGAATTAATTGGCAAAACTCCATTGGTATATCTCAACCGCATCGTGGATGGCTGTGTTGCCAAAGTTGCTGCGAAGCTAGAAATGATGGAACCTTGCTCCAGTGTCAAAGACAGGATAGGGTATAGCATGATTGTAGATGCTGAGGAGAAAGGATTCATCACACCGGGTGAAAGTGTCCTCATTGAGCCTACTAGTGGAAACACGGGCATAGGTTTGGCATTCATGGCAGCTGCTAAGGGTTATAAACTTATTATAACCATGCCTTCTTCGATGAGTCTCGAAAGACGAACCATTCTTCGGGCTTTTGGAGCTGAGTTAGTCCTCACTGATCCCGCCAAAGGTATGAAAGGAGCTGTTCAGAAGGCAGAAGAGATTCGGGATAAGACTCCAAATTCTTATATTCTTCAGCAATTTGAAAATCCTGCCAACCCAAAGATCCATTATGAAACCACTGGACCGGAGATCTGGAAGGGCTCTAGTGGGAAGGTTGATGCTCTTGTCTCTGGGATTGGGACTGGAGGTACAATAACAGGTGCTGGAAAATATCTGAAAGATCAGAACCCTGATATAAAGCTATATGGCATTGAACCAGTAGAAAGTCCAATACTGTCTGGAGGAAAACCTGGCCCTCATAAGATCCAAGGAATTGGTGCTGGCTTCATCCCTGGTGTTCTGGATGTCGATTTACTTGATGAAGTTGTTCAAATTTCAAGTGAAGAAGCCATTGAAACTGCTAAACTTCTTGCTTTGAAAGAAGGTTTGCTGGTGGGAATATCATCTGGTGCAGCTGCAGCTGCTGCAATTAAGATAGCAAAGAGGCCAGAAAATGCTGGAAAACTCATTATTGCGGTCTTCCCAAGCTTTGGAGAGCGTTATTTATCATCTGTGCTCTTTGAATCCGTGAAGCGAGAAGCAGAGAGCATGGTCTTCGAGCCTTGAATATGAAGTTATACGAGCCATTTGCTGCTTTTCAAGTTGCATTCTCTCCTTGGGTTGTGTATCTATTTTTTCTCTTATGGATCTGAAAAATAAAAAATGGTTTATGTTTGGTTGTTAATTGACTACGATTTAATAAAAAATATAAGATGTTTGCTGGAATGTTCAAACTCTCTTATAATTGTTGATTATTTACAGATCATGATGCCATGAACTCATGCTTGTACTAGTT

>Glyma.03g244800.3 sequence-type=transcript locus=Glyma.03g244800 ID=Glyma.03g244800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCATTCTAAATGGAATATTGCAAATTCTTGATCTGTTTGTCGTCACAGGATAAGTCAAATCAACCAATACAAGTCCAGATAAATTGATTTATGATGATGATGTTATGTCTTTCTGTTTGTAATTACCAGAATCTTTTAACCCTTTTTATGATTTTGCAGTACTTTGCTTAATATGGCGGTTGAGAAGTTGAGCATTGCAAAAGATGTGACTGAATTAATTGGCAAAACTCCATTGGTATATCTCAACCGCATCGTGGATGGCTGTGTTGCCAAAGTTGCTGCGAAGCTAGAAATGATGGAACCTTGCTCCAGTGTCAAAGACAGGATAGGGTATAGCATGATTGTAGATGCTGAGGAGAAAGGATTCATCACACCGGGTGAAAGTGTCCTCATTGAGCCTACTAGTGGAAACACGGGCATAGGTTTGGCATTCATGGCAGCTGCTAAGGGTTATAAACTTATTATAACCATGCCTTCTTCGATGAGTCTCGAAAGACGAACCATTCTTCGGGCTTTTGGAGCTGAGTTAGTCCTCACTGATCCCGCCAAAGGTATGAAAGGAGCTGTTCAGAAGGCAGAAGAGATTCGGGATAAGACTCCAAATTCTTATATTCTTCAGCAATTTGAAAATCCTGCCAACCCAAAGATCCATTATGAAACCACTGGACCGGAGATCTGGAAGGGCTCTAGTGGGAAGGTTGATGCTCTTGTCTCTGGGATTGGGACTGGAGGTACAATAACAGGTGCTGGAAAATATCTGAAAGATCAGAACCCTGATATAAAGCTATATGGCATTGAACCAGTAGAAAGTCCAATACTGTCTGGAGGAAAACCTGGCCCTCATAAGATCCAAGGAATTGGTGCTGGCTTCATCCCTGGTGTTCTGGATGTCGATTTACTTGATGAAGTTGTTCAAATTTCAAGTGAAGAAGCCATTGAAACTGCTAAACTTCTTGCTTTGAAAGAAGGTTTGCTGGTGGGAATATCATCTGGTGCAGCTGCAGCTGCTGCAATTAAGATAGCAAAGAGGCCAGAAAATGCTGGAAAACTCATTATTGCGGTCTTCCCAAGCTTTGGAGAGCGTTATTTATCATCTGTGCTCTTTGAATCCGTGAAGCGAGAAGCAGAGAGCATGGTCTTCGAGCCTTGAATATGAAGTTATACGAGCCATTTGCTGCTTTTCAAGTTGCATTCTCTCCTTGGGTTGTGTATCTATTTTTTCTCTTATGGATCTGAAAAATAAAAAATGGTTTATGTTTGGTTGTTAATTGACTACGATTTAATAAAAAATATAAGATGTTTGCTGGAATGTTCAAACTCTCTTATAATTGTTGATTATTTACAGATCATGATGCCATGAACTCATGCTTGTACTAGTT
Coding sequences of Glyma.03g244800
>Glyma.03g244800.1 sequence-type=CDS polypeptide=Glyma.03g244800.1.p locus=Glyma.03g244800 ID=Glyma.03g244800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTGAGAAGTTGAGCATTGCAAAAGATGTGACTGAATTAATTGGCAAAACTCCATTGGTATATCTCAACCGCATCGTGGATGGCTGTGTTGCCAAAGTTGCTGCGAAGCTAGAAATGATGGAACCTTGCTCCAGTGTCAAAGACAGGATAGGGTATAGCATGATTGTAGATGCTGAGGAGAAAGGATTCATCACACCGGGTGAAAGTGTCCTCATTGAGCCTACTAGTGGAAACACGGGCATAGGTTTGGCATTCATGGCAGCTGCTAAGGGTTATAAACTTATTATAACCATGCCTTCTTCGATGAGTCTCGAAAGACGAACCATTCTTCGGGCTTTTGGAGCTGAGTTAGTCCTCACTGATCCCGCCAAAGGTATGAAAGGAGCTGTTCAGAAGGCAGAAGAGATTCGGGATAAGACTCCAAATTCTTATATTCTTCAGCAATTTGAAAATCCTGCCAACCCAAAGATCCATTATGAAACCACTGGACCGGAGATCTGGAAGGGCTCTAGTGGGAAGGTTGATGCTCTTGTCTCTGGGATTGGGACTGGAGGTACAATAACAGGTGCTGGAAAATATCTGAAAGATCAGAACCCTGATATAAAGCTATATGGCATTGAACCAGTAGAAAGTCCAATACTGTCTGGAGGAAAACCTGGCCCTCATAAGATCCAAGGAATTGGTGCTGGCTTCATCCCTGGTGTTCTGGATGTCGATTTACTTGATGAAGTTGTTCAAATTTCAAGTGAAGAAGCCATTGAAACTGCTAAACTTCTTGCTTTGAAAGAAGGTTTGCTGGTGGGAATATCATCTGGTGCAGCTGCAGCTGCTGCAATTAAGATAGCAAAGAGGCCAGAAAATGCTGGAAAACTCATTATTGCGGTCTTCCCAAGCTTTGGAGAGCGTTATTTATCATCTGTGCTCTTTGAATCCGTGAAGCGAGAAGCAGAGAGCATGGTCTTCGAGCCTTGA

>Glyma.03g244800.2 sequence-type=CDS polypeptide=Glyma.03g244800.2.p locus=Glyma.03g244800 ID=Glyma.03g244800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTGAGAAGTTGAGCATTGCAAAAGATGTGACTGAATTAATTGGCAAAACTCCATTGGTATATCTCAACCGCATCGTGGATGGCTGTGTTGCCAAAGTTGCTGCGAAGCTAGAAATGATGGAACCTTGCTCCAGTGTCAAAGACAGGATAGGGTATAGCATGATTGTAGATGCTGAGGAGAAAGGATTCATCACACCGGGTGAAAGTGTCCTCATTGAGCCTACTAGTGGAAACACGGGCATAGGTTTGGCATTCATGGCAGCTGCTAAGGGTTATAAACTTATTATAACCATGCCTTCTTCGATGAGTCTCGAAAGACGAACCATTCTTCGGGCTTTTGGAGCTGAGTTAGTCCTCACTGATCCCGCCAAAGGTATGAAAGGAGCTGTTCAGAAGGCAGAAGAGATTCGGGATAAGACTCCAAATTCTTATATTCTTCAGCAATTTGAAAATCCTGCCAACCCAAAGATCCATTATGAAACCACTGGACCGGAGATCTGGAAGGGCTCTAGTGGGAAGGTTGATGCTCTTGTCTCTGGGATTGGGACTGGAGGTACAATAACAGGTGCTGGAAAATATCTGAAAGATCAGAACCCTGATATAAAGCTATATGGCATTGAACCAGTAGAAAGTCCAATACTGTCTGGAGGAAAACCTGGCCCTCATAAGATCCAAGGAATTGGTGCTGGCTTCATCCCTGGTGTTCTGGATGTCGATTTACTTGATGAAGTTGTTCAAATTTCAAGTGAAGAAGCCATTGAAACTGCTAAACTTCTTGCTTTGAAAGAAGGTTTGCTGGTGGGAATATCATCTGGTGCAGCTGCAGCTGCTGCAATTAAGATAGCAAAGAGGCCAGAAAATGCTGGAAAACTCATTATTGCGGTCTTCCCAAGCTTTGGAGAGCGTTATTTATCATCTGTGCTCTTTGAATCCGTGAAGCGAGAAGCAGAGAGCATGGTCTTCGAGCCTTGA

>Glyma.03g244800.3 sequence-type=CDS polypeptide=Glyma.03g244800.3.p locus=Glyma.03g244800 ID=Glyma.03g244800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGTTGAGAAGTTGAGCATTGCAAAAGATGTGACTGAATTAATTGGCAAAACTCCATTGGTATATCTCAACCGCATCGTGGATGGCTGTGTTGCCAAAGTTGCTGCGAAGCTAGAAATGATGGAACCTTGCTCCAGTGTCAAAGACAGGATAGGGTATAGCATGATTGTAGATGCTGAGGAGAAAGGATTCATCACACCGGGTGAAAGTGTCCTCATTGAGCCTACTAGTGGAAACACGGGCATAGGTTTGGCATTCATGGCAGCTGCTAAGGGTTATAAACTTATTATAACCATGCCTTCTTCGATGAGTCTCGAAAGACGAACCATTCTTCGGGCTTTTGGAGCTGAGTTAGTCCTCACTGATCCCGCCAAAGGTATGAAAGGAGCTGTTCAGAAGGCAGAAGAGATTCGGGATAAGACTCCAAATTCTTATATTCTTCAGCAATTTGAAAATCCTGCCAACCCAAAGATCCATTATGAAACCACTGGACCGGAGATCTGGAAGGGCTCTAGTGGGAAGGTTGATGCTCTTGTCTCTGGGATTGGGACTGGAGGTACAATAACAGGTGCTGGAAAATATCTGAAAGATCAGAACCCTGATATAAAGCTATATGGCATTGAACCAGTAGAAAGTCCAATACTGTCTGGAGGAAAACCTGGCCCTCATAAGATCCAAGGAATTGGTGCTGGCTTCATCCCTGGTGTTCTGGATGTCGATTTACTTGATGAAGTTGTTCAAATTTCAAGTGAAGAAGCCATTGAAACTGCTAAACTTCTTGCTTTGAAAGAAGGTTTGCTGGTGGGAATATCATCTGGTGCAGCTGCAGCTGCTGCAATTAAGATAGCAAAGAGGCCAGAAAATGCTGGAAAACTCATTATTGCGGTCTTCCCAAGCTTTGGAGAGCGTTATTTATCATCTGTGCTCTTTGAATCCGTGAAGCGAGAAGCAGAGAGCATGGTCTTCGAGCCTTGA
Predicted protein sequences of Glyma.03g244800
>Glyma.03g244800.1.p sequence-type=predicted peptide transcript=Glyma.03g244800.1 locus=Glyma.03g244800 ID=Glyma.03g244800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVEKLSIAKDVTELIGKTPLVYLNRIVDGCVAKVAAKLEMMEPCSSVKDRIGYSMIVDAEEKGFITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPEIWKGSSGKVDALVSGIGTGGTITGAGKYLKDQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIIAVFPSFGERYLSSVLFESVKREAESMVFEP*

>Glyma.03g244800.2.p sequence-type=predicted peptide transcript=Glyma.03g244800.2 locus=Glyma.03g244800 ID=Glyma.03g244800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVEKLSIAKDVTELIGKTPLVYLNRIVDGCVAKVAAKLEMMEPCSSVKDRIGYSMIVDAEEKGFITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPEIWKGSSGKVDALVSGIGTGGTITGAGKYLKDQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIIAVFPSFGERYLSSVLFESVKREAESMVFEP*

>Glyma.03g244800.3.p sequence-type=predicted peptide transcript=Glyma.03g244800.3 locus=Glyma.03g244800 ID=Glyma.03g244800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVEKLSIAKDVTELIGKTPLVYLNRIVDGCVAKVAAKLEMMEPCSSVKDRIGYSMIVDAEEKGFITPGESVLIEPTSGNTGIGLAFMAAAKGYKLIITMPSSMSLERRTILRAFGAELVLTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKIHYETTGPEIWKGSSGKVDALVSGIGTGGTITGAGKYLKDQNPDIKLYGIEPVESPILSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQISSEEAIETAKLLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIIAVFPSFGERYLSSVLFESVKREAESMVFEP*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo