Glyma.03g242900

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Report for Sequence Feature Glyma.03g242900

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44076299
stop:	44079720
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g242900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08830.1	AT	copper/zinc superoxide dismutase 1	JGI	N/A	IEA
GO:0006801	GO-bp	superoxide metabolic process	EnsemblGenomes	N/A	IEA
GO:0006801	GO-bp	superoxide metabolic process	JGI	N/A	IEA
GO:0019430	GO-bp	removal of superoxide radicals	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005615	GO-cc	extracellular space	EnsemblGenomes	N/A	IEA
GO:0005737	GO-cc	cytoplasm	EnsemblGenomes	N/A	IEA
GO:0004784	GO-mf	superoxide dismutase activity	EnsemblGenomes	N/A	IEA
GO:0005507	GO-mf	copper ion binding	EnsemblGenomes	N/A	IEA
GO:0008270	GO-mf	zinc ion binding	EnsemblGenomes	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	EnsemblGenomes	N/A	IEA
GO:0046872	GO-mf	metal ion binding	JGI	N/A	IEA
KOG0441	KOG	Cu2+/Zn2+ superoxide dismutase SOD1	JGI	N/A	IEA
PTHR10003	Panther	SUPEROXIDE DISMUTASE [CU-ZN]-RELATED	JGI	N/A	IEA
PF00080	PFAM	Copper/zinc superoxide dismutase (SODC)	JGI	N/A	IEA
DETOX1-PWY	SoyCyc9	superoxide radicals degradation	Plant Metabolic Network		ISS
DETOX1-PWY-1	SoyCyc9	reactive oxygen species degradation	Plant Metabolic Network		ISS
GN7V-67370	SoyCyc9-rxn	superoxide dismutase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.03g242900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g242900 not represented in the dataset	Glyma.03g242900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g242900

Paralog	Evidence	Comments
Glyma.19g240400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g242900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g40280	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g242900

Limit To All Plant Sequences

>Glyma.03g242900.2 sequence-type=transcript locus=Glyma.03g242900 ID=Glyma.03g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATAGATAGAATGGTAATAGTGGTCGAGGATCTCGAGGCGTGCTAACACGCCTCACTCGCTATAAATAAATAACAATAAACCCACTCTGCTTCCATCCAtctttttcttcttactctagactcttccttttctcttctctgtctAAGGGGTGCCCTGAGATCACATTGAACAATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACTGTCAGCTTCACTATTACTGACAGCCAGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAAGTTGGAAACGTGCTTTAGATTTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTACTGCTGAATTCTGTGTTTTGCTTGTATTGTATCGACACTTGATGCTTAATCAAATTGTTACATTGCTTGAAGTATGTGTTGGTGGTTATCCTTATTTCTTGTATCAATTTGTGCTTGAAGTATGATGATACTCGAGAAATGTGAGATTTTCAATTGGAAAATAATGACATGGAATGGAATACAAGTGTCATTTTATTGTTTGGATATTTTATGATAGAACCAAACAAAGATTAGTT

>Glyma.03g242900.3 sequence-type=transcript locus=Glyma.03g242900 ID=Glyma.03g242900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GATAGATAGAATGGTAATAGTGGTCGAGGATCTCGAGGCGTGCTAACACGCCTCACTCGCTATAAATAAATAACAATAAACCCACTCTGCTTCCATCCAtctttttcttcttactctagactcttccttttctcttctctgtctAAGGGGTGCCCTGAGATCACATTGAACAATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAAACTAATCACATGAAGTTGGAAACGTGCTTTAGATTTGTGGAATAAAGTAGCACCCATTTAAACCCGTTTGGTTAGGTCCGGTCTGTACTGCTGAATTCTGTGTTTTGCTTGTATTGTATCGACACTTGATGCTTAATCAAATTGTTACATTGCTTGAAGTATGTGTTGGTGGTTATCCTTATTTCTTGTATCAATTTGTGCTTGAAGTATGATGATACTCGAGAAATGTGAGATTTTCAATTGGAAAATAATGACATGGAATGGAATACAAGTGTCATTTTATTGTTTGGATATTTTATGATAGAACCAAACAAAGATTAGTT

Coding sequences of Glyma.03g242900

Limit To All Plant Sequences

>Glyma.03g242900.1 sequence-type=CDS polypeptide=Glyma.03g242900.1.p locus=Glyma.03g242900 ID=Glyma.03g242900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACTGTCAGCTTCACTATTACTGACAGCCAGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma.03g242900.2 sequence-type=CDS polypeptide=Glyma.03g242900.2.p locus=Glyma.03g242900 ID=Glyma.03g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGGTACTGTCAGCTTCACTATTACTGACAGCCAGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGATCCTGATGATCTTGGGAAAGGTGGTCATGAGCTTAGCAAAACTACTGGAAATGCTGGTGGCAGAGTAGCTTGTGGTATCATTGGTCTGCAAGGATAA

>Glyma.03g242900.3 sequence-type=CDS polypeptide=Glyma.03g242900.3.p locus=Glyma.03g242900 ID=Glyma.03g242900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAAGGCTGTGGCCGTTCTTGGCAGCAGTGAGGGTGTCACTGGAACTATTCACTTCGTTCAGGAGGGAAGTGGTCCAACCACCGTAACTGGATCTCTTGCTGGTCTTAAGCCTGGTCTCCATGGTTTCCATGTCCATGCCTTGGGGGACACTACCAATGGTTGCCTCTCAACTGGATCACATTTCAATCCTAATAACAAGGAGCATGGTGCCCCTGAGGATGAGAATCGTCATGCTGGTGATCTTGGGAATGTTAATGTCGGTGATGATGATTCCTCTCACTGGACCAAACAACATCATAGGAAGGGCGGTTGTTGTCCATGCTGA

Predicted protein sequences of Glyma.03g242900

Limit To All Plant Sequences

>Glyma.03g242900.1.p sequence-type=predicted peptide transcript=Glyma.03g242900.1 locus=Glyma.03g242900 ID=Glyma.03g242900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIHFVQEGSGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGSHFNPNNKEHGAPEDENRHAGDLGNVNVGDDGTVSFTITDSQIPLTGPNNIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma.03g242900.2.p sequence-type=predicted peptide transcript=Glyma.03g242900.2 locus=Glyma.03g242900 ID=Glyma.03g242900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIHFVQEGSGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGSHFNPNNKEHGAPEDENRHAGDLGNVNVGDDGTVSFTITDSQIPLTGPNNIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG*

>Glyma.03g242900.3.p sequence-type=predicted peptide transcript=Glyma.03g242900.3 locus=Glyma.03g242900 ID=Glyma.03g242900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVKAVAVLGSSEGVTGTIHFVQEGSGPTTVTGSLAGLKPGLHGFHVHALGDTTNGCLSTGSHFNPNNKEHGAPEDENRHAGDLGNVNVGDDDSSHWTKQHHRKGGCCPC*

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