Glyma.03g242500

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Report for Sequence Feature Glyma.03g242500

Feature Type:	gene_model
Chromosome:	Gm03
Start:	44051818
stop:	44054683
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g242500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G05000.1	AT	Transport protein particle (TRAPP) component	JGI	N/A	IEA
GO:0006888	GO-bp	ER to Golgi vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0043087	GO-bp	regulation of GTPase activity	EnsemblGenomes	N/A	IEA
GO:0048193	GO-bp	Golgi vesicle transport	EnsemblGenomes	N/A	IEA
GO:0005801	GO-cc	cis-Golgi network	EnsemblGenomes	N/A	IEA
GO:0005802	GO-cc	trans-Golgi network	EnsemblGenomes	N/A	IEA
GO:0030008	GO-cc	TRAPP complex	EnsemblGenomes	N/A	IEA
KOG3316	KOG	Transport protein particle (TRAPP) complex subunit	JGI	N/A	IEA
PTHR12817	Panther	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B	JGI	N/A	IEA
PF04051	PFAM	Transport protein particle (TRAPP) component	JGI	N/A	IEA

Expression Patterns of Glyma.03g242500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g242500 not represented in the dataset	Glyma.03g242500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g242500

Paralog	Evidence	Comments
Glyma.19g240000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g242500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g40243	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g242500

Limit To All Plant Sequences

>Glyma.03g242500.2 sequence-type=transcript locus=Glyma.03g242500 ID=Glyma.03g242500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTCTAGATCGGGGTGAGGCAAGGGAAGCAAGGACGATGAGTATAGTATGAGTAATCAGATTCAGAGTGTATAGTGATTCTGATTCTTTCATTTTCCATAGATTagcaagcaatcgagcgagggagggagagagagagagagagagagaATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGAAGAGTTCATAGTTGTAATACTGATGATGGAAGGGGAAGCATTAATATTGTTCAAAACAATGCTTTGATGTCTGTGAGCTCTTTTGTCGTAAAATGCTCGAGTGGGGAATGTTTCTTTACGAGATATAAACTATTATATTAAATGTTATTGACTGGAATGTGTAGGAAGGGCTCCTGAGGTAGTATTTTGATAAGTGAGGATTTGGTTCTTTCAGGCGCAGATTCTATGGAGTACGATAACATCGAATTATTGGACTGTGGAAAGACGGAGAATTCCAATCATTGTAATATTGTTGCTCTTGTATGGAACCTTTTAAAACATGTACCACTTATTCGATTGCCAATTTGCAGGAGGCTGGCTTTTTTTATAAGACTGACTTAAATTTACATATTTAAATTATATTTTCTTCATATGGT

>Glyma.03g242500.3 sequence-type=transcript locus=Glyma.03g242500 ID=Glyma.03g242500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTCTAGATCGGGGTGAGGCAAGGGAAGCAAGGACGATGAGTATAGTATGAGTAATCAGATTCAGAGTGTATAGTGATTCTGATTCTTTCATTTTCCATAGATTagcaagcaatcgagcgagggagggagagagagagagagagagagaATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGAAGAGTTCATAGTTGTAATACTGATGATGGAAGGGGAAGCATTAATATTGTTCAAAACAATGCTTTGATGTCTGTGAGCTCTTTTGTCGTAAAATGCTCGAGCGCAGATTCTATGGAGTACGATAACATCGAATTATTGGACTGTGGAAAGACGGAGAATTCCAATCATTGTAATATTGTTGCTCTTGTATGGAACCTTTTAAAACATGTACCACTTATTCGATTGCCAATTTGCAGGAGGCTGGCTTTTTTTATAAGACTGACTTAAATTTACATATTTAAATTATATTTTCTTCATATGGT

>Glyma.03g242500.4 sequence-type=transcript locus=Glyma.03g242500 ID=Glyma.03g242500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGTCTAGATCGGGGTGAGGCAAGGGAAGCAAGGACGATGAGTATAGTATGAGTAATCAGATTCAGAGTGTATAGTGATTCTGATTCTTTCATTTTCCATAGATTagcaagcaatcgagcgagggagggagagagagagagagagagagaATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGAAGAGTTCATAGTTGTAATACTGATGATGGAAGGGGAAGCATTAATATTGTTCAAAACAATGCTTTGATGTCTGTGAGCTCTTTTGTCGTAAAATGCTCGAGTGGGGAATGTTTCTTTACGAGATATAAACTATTATATTAAATGTTATTGACTGGAATGTGTAGGAAGGGCTCCTGAGGTAGTATTTTGATAAGTGAGGATTTGGTTCTTTCAGGCGCAGATTCTATGGAGTACGATAACATCGAATTATTGGACTGTGGAAAGACGGAGAATTCCAATCATTGTAATATTGTTGCTCTTGTATGGAACCTTTTAAAACATGTACCACTTATTCGATTGCCAATTTGCAGGAGGCTGGCTTTTTTTATAAGACTGACTTAAATTTACATATTTAAATTATATTTTCTTCATATGGT

Coding sequences of Glyma.03g242500

Limit To All Plant Sequences

>Glyma.03g242500.1 sequence-type=CDS polypeptide=Glyma.03g242500.1.p locus=Glyma.03g242500 ID=Glyma.03g242500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTGTGTATCTCTCTCTCTCACACAATTTAGAGAAGACTTTTTAG

>Glyma.03g242500.2 sequence-type=CDS polypeptide=Glyma.03g242500.2.p locus=Glyma.03g242500 ID=Glyma.03g242500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGA

>Glyma.03g242500.3 sequence-type=CDS polypeptide=Glyma.03g242500.3.p locus=Glyma.03g242500 ID=Glyma.03g242500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGA

>Glyma.03g242500.4 sequence-type=CDS polypeptide=Glyma.03g242500.4.p locus=Glyma.03g242500 ID=Glyma.03g242500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCGGGAAGTATCAGAGAGTTGCATTGATAGCTTATTGACGGAGATGGTGGCGTGCTATTGCAACCGATTCTACGCAAACAAGCCTGAACTCGCCGCACGCCGGATCGAGGCCATTGGATATCAGGTCGGTCACCAGCTCTCTGAAAGGTATACCATGGATCGGCCTCGGTTCACGGATCATCTGGAGGCCATCAAGTTCATCTGCAAGGATTTCTGGTCTGAGCTCTTTAAGAAGCAGATTGACAACTTGAAGACAAACCATAGGGGTACATTTGTATTGCAAGATAATAAATTTCGCTGGCTTGCACGGATGTCAATTGATCCATCCACTGAAAATGTTAGTCCAGTTGAAGATATTACTTCACCTACAGCTGAAAGCAAGGCAGCACAAGCAATGAGCATGCATCTTTACTTCCCATGTGGGATCATTAGAGGAGCTCTTTCCAACTTGGGAATTCCTTGTGCAGTTTCTGCGGATATATCAAACCTTCCTGCATGTTCATTTGTGGTCCGTATAAAAGCTTGA

Predicted protein sequences of Glyma.03g242500

Limit To All Plant Sequences

>Glyma.03g242500.1.p sequence-type=predicted peptide transcript=Glyma.03g242500.1 locus=Glyma.03g242500 ID=Glyma.03g242500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVREVSESCIDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACVYLSLSHNLEKTF*

>Glyma.03g242500.2.p sequence-type=predicted peptide transcript=Glyma.03g242500.2 locus=Glyma.03g242500 ID=Glyma.03g242500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA*

>Glyma.03g242500.3.p sequence-type=predicted peptide transcript=Glyma.03g242500.3 locus=Glyma.03g242500 ID=Glyma.03g242500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVREVSESCIDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA*

>Glyma.03g242500.4.p sequence-type=predicted peptide transcript=Glyma.03g242500.4 locus=Glyma.03g242500 ID=Glyma.03g242500.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVREVSESCIDSLLTEMVACYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMDRPRFTDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNKFRWLARMSIDPSTENVSPVEDITSPTAESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIKA*

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