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Report for Sequence Feature Glyma.03g240100

Feature Type:gene_model
Chromosome:Gm03
Start:43884764
stop:43895501
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g240100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27410.2AT D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG0975 KOG Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily JGI N/AIEA
PTHR11825Panther SUBGROUP IIII AMINOTRANSFERASE JGI N/AIEA
PTHR11825:SF13Panther JGI N/AIEA
PF01063PFAM Aminotransferase class IV JGI N/AIEA
BRANCHED-CHAIN-AA-SYN-PWYSoyCyc9 superpathway of branched chain amino acid biosynthesis Plant Metabolic Network ISS
ILEUDEG-PWYSoyCyc9 L-isoleucine degradation I Plant Metabolic Network ISS
ILEUSYN-PWYSoyCyc9 L-isoleucine biosynthesis I (from threonine) Plant Metabolic Network ISS
LEU-DEG2-PWYSoyCyc9 L-leucine degradation I Plant Metabolic Network ISS
LEUSYN-PWYSoyCyc9 L-leucine biosynthesis Plant Metabolic Network ISS
PWY-3001SoyCyc9 superpathway of L-isoleucine biosynthesis I Plant Metabolic Network ISS
VALDEG-PWYSoyCyc9 L-valine degradation I Plant Metabolic Network ISS
VALSYN-PWYSoyCyc9 L-valine biosynthesis Plant Metabolic Network ISS
GN7V-61045SoyCyc9-rxn leucine transaminase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g240100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g240100
ParalogEvidenceComments
Glyma.19g237000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g240100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g40000 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g240100
>Glyma.03g240100.2 sequence-type=transcript locus=Glyma.03g240100 ID=Glyma.03g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTTTTTTAATCAAAAACACCGTTTATGTTTATGCAATTGTAAGTGTTAATAAGTGGTTGCAACTACAAGACAAAAAGGCAAACTGTAAATGCATCACGTGTTATCATCATCTAACTTACTTTGAATTAATTACTAGACCGTAGTACTTCAGTAGTTACTTACTGGCTTACCATGTTTCTGACTTTCTGTTGCCTTTCATAGGATTTAAAAAAAAAAAAAACTTGTTTAATCTTTTGAGATTCCTCGGGATTTGTTGGTTCCTGTTTTGAGATTTTGACCCTTCTTTTTATATTCTGTTTTATTGGGATTCTCACTTTGAAAAGTGGCAATCCCAATCGATTCCATATTCTAGAAATCAAACTGAATCAGAGCTTAGCGTGGTGAACTCAGTGAGTGAGTGAGAGATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCTGATGGAGATAAGGTCACTAATGACATAATTTTTGCTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGATAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCAATGCTCAAGTGGGAAGCAGGTCCAAAGCCAATAGATGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGAGAAATTGCTTGCTTGGGTTGGTGATGAGATTGTGACACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCTGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTATATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTATTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATGGATCTTGTGGTGAAAGAACAATTAATCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGAAGACCTGTCTTGAAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCCGTAGTGAAGGTTGATGGTCGCATAATTGGCAATGGAGAAGTaggaccagtcactagaaggttgcaagctgcttataaaaagttgacagaacagtctggtgtacctATACCAACCTATCTTAAGACTTGAAAGACTGCAGTTGGAAGTGAGAGGAAAttgctgctgtacattactaaaagctacatatatggaagcatttttccctCTCGTATTAATTAATAAAATAGTGAAGAAGACCTTTTTCTCTCAGTTTTTTTGGGGGGAAGGGGGTATATCTAAATAAATATAGTACAATTTGCAAGTTTAAAAATGTAATTTAGTACAAATTTTATCATCGTCTCACGTTTTGCAACTTTTCGACAATAAATATCAATTCTCATGCGCTGTATTTCAGAGATGCAAGCGAAAAGTAGATAACGGGGATATGTGTTGTGACTTGTGAATTATGATAGAGAATTCTGTTCGATTTCTAAAACTGTACGAGTAGTGGATAGGAAAAAAATATTTTTCCATCCTTTGAGGGATTCAAACCCAATTTTATTCAAATCAACATAATGTTGATACTATTAAAAGAATTGTTTAGTAGCAAAAATTATTTTATTAATATATACAATTCTTTTTATATGC
Coding sequences of Glyma.03g240100
>Glyma.03g240100.1 sequence-type=CDS polypeptide=Glyma.03g240100.1.p locus=Glyma.03g240100 ID=Glyma.03g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCTGATGGAGATAAGGTCACTAATGACATAATTTTTGCTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGATAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCAATGCTCAAGTGGGAAGCAGGTCCAAAGCCAATAGATGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGAGAAATTGCTTGCTTGGGTTGGTGATGAGATTGTGACACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCTGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTATATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTATTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATGGATCTTGTGGTGAAAGAACAATTAATCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCCGTAGTGAAGGTTGATGGTCGCATAATTGGCAATGGAGAAGTAGGACCAGTCACTAGAAGGTTGCAAGCTGCTTATAAAAAGTTGACAGAACAGTCTGGTGTACCTATACCAACCTATCTTAAGACTTGA

>Glyma.03g240100.2 sequence-type=CDS polypeptide=Glyma.03g240100.2.p locus=Glyma.03g240100 ID=Glyma.03g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCTGATGGAGATAAGGTCACTAATGACATAATTTTTGCTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGATAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCAATGCTCAAGTGGGAAGCAGGTCCAAAGCCAATAGATGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGAGAAATTGCTTGCTTGGGTTGGTGATGAGATTGTGACACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCTGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTATATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTATTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATGGATCTTGTGGTGAAAGAACAATTAATCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGAAGACCTGTCTTGAAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCCGTAGTGAAGGTTGA
Predicted protein sequences of Glyma.03g240100
>Glyma.03g240100.1.p sequence-type=predicted peptide transcript=Glyma.03g240100.1 locus=Glyma.03g240100 ID=Glyma.03g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESEVEVIHSWSAPRSLSTSLMYSFSQRDDIEVLDEPLYANFLRVTGLDRPYREELLSKMEADGDKVTNDIIFAPGKKKYRFCKHISKQRLQGLTDDLMKKGKHFILIRNPLDILPSFDKVVPPSFYELGLAELVCIYNELREIGKAPPVIDAAELQQDPEATLRSLCNDLEIPFQSAMLKWEAGPKPIDGLWAPWWYKSVHKSTGFEKPRKYPQPFPFSLYDLLEQSLPLYNMLRRHVKKKSSLLSPPLPNPDLPVPANEKLLAWVGDEIVTRDSAKVSVFDSVVQGGDSVWEGLRVYNGKIFKLEEHLDRLFDSAKALAFENVPTQDEIKEAIFRTLIRNGMFDNSHIRLSLTRGKKVSSGMSPAFNLYGCTLIVLAEWKPPVYDNTRGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNAKADDAIMLDQDGYLSETNATNIFVVKKGRVLTPHADYCLPGITRATVMDLVVKEQLILEERRISLSEVHTADEVWTTGTMGELSPVVKVDGRIIGNGEVGPVTRRLQAAYKKLTEQSGVPIPTYLKT*

>Glyma.03g240100.2.p sequence-type=predicted peptide transcript=Glyma.03g240100.2 locus=Glyma.03g240100 ID=Glyma.03g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAESEVEVIHSWSAPRSLSTSLMYSFSQRDDIEVLDEPLYANFLRVTGLDRPYREELLSKMEADGDKVTNDIIFAPGKKKYRFCKHISKQRLQGLTDDLMKKGKHFILIRNPLDILPSFDKVVPPSFYELGLAELVCIYNELREIGKAPPVIDAAELQQDPEATLRSLCNDLEIPFQSAMLKWEAGPKPIDGLWAPWWYKSVHKSTGFEKPRKYPQPFPFSLYDLLEQSLPLYNMLRRHVKKKSSLLSPPLPNPDLPVPANEKLLAWVGDEIVTRDSAKVSVFDSVVQGGDSVWEGLRVYNGKIFKLEEHLDRLFDSAKALAFENVPTQDEIKEAIFRTLIRNGMFDNSHIRLSLTRGKKVSSGMSPAFNLYGCTLIVLAEWKPPVYDNTRGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNAKADDAIMLDQDGYLSETNATNIFVVKKGRVLTPHADYCLPGITRATVMDLVVKEQLILEERRISLSEVHTADEKTCLEGMDDWNNGRTKPRSEG*






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