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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G27410.2 | AT | D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein | JGI | N/A | IEA |
GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
GO:0008483 | GO-mf | transaminase activity | EnsemblGenomes | N/A | IEA |
GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
KOG0975 | KOG | Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily | JGI | N/A | IEA |
PTHR11825 | Panther | SUBGROUP IIII AMINOTRANSFERASE | JGI | N/A | IEA |
PTHR11825:SF13 | Panther | JGI | N/A | IEA | |
PF01063 | PFAM | Aminotransferase class IV | JGI | N/A | IEA |
BRANCHED-CHAIN-AA-SYN-PWY | SoyCyc9 | superpathway of branched chain amino acid biosynthesis | Plant Metabolic Network | ISS | |
ILEUDEG-PWY | SoyCyc9 | L-isoleucine degradation I | Plant Metabolic Network | ISS | |
ILEUSYN-PWY | SoyCyc9 | L-isoleucine biosynthesis I (from threonine) | Plant Metabolic Network | ISS | |
LEU-DEG2-PWY | SoyCyc9 | L-leucine degradation I | Plant Metabolic Network | ISS | |
LEUSYN-PWY | SoyCyc9 | L-leucine biosynthesis | Plant Metabolic Network | ISS | |
PWY-3001 | SoyCyc9 | superpathway of L-isoleucine biosynthesis I | Plant Metabolic Network | ISS | |
VALDEG-PWY | SoyCyc9 | L-valine degradation I | Plant Metabolic Network | ISS | |
VALSYN-PWY | SoyCyc9 | L-valine biosynthesis | Plant Metabolic Network | ISS | |
GN7V-61045 | SoyCyc9-rxn | leucine transaminase | Plant Metabolic Network | ISS |
Glyma.03g240100 not represented in the dataset |
Glyma.03g240100 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.19g237000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma03g40000 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g240100.2 sequence-type=transcript locus=Glyma.03g240100 ID=Glyma.03g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTTTTTTAATCAAAAACACCGTTTATGTTTATGCAATTGTAAGTGTTAATAAGTGGTTGCAACTACAAGACAAAAAGGCAAACTGTAAATGCATCACGTGTTATCATCATCTAACTTACTTTGAATTAATTACTAGACCGTAGTACTTCAGTAGTTACTTACTGGCTTACCATGTTTCTGACTTTCTGTTGCCTTTCATAGGATTTAAAAAAAAAAAAAACTTGTTTAATCTTTTGAGATTCCTCGGGATTTGTTGGTTCCTGTTTTGAGATTTTGACCCTTCTTTTTATATTCTGTTTTATTGGGATTCTCACTTTGAAAAGTGGCAATCCCAATCGATTCCATATTCTAGAAATCAAACTGAATCAGAGCTTAGCGTGGTGAACTCAGTGAGTGAGTGAGAGATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCTGATGGAGATAAGGTCACTAATGACATAATTTTTGCTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGATAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCAATGCTCAAGTGGGAAGCAGGTCCAAAGCCAATAGATGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGAGAAATTGCTTGCTTGGGTTGGTGATGAGATTGTGACACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCTGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTATATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTATTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATGGATCTTGTGGTGAAAGAACAATTAATCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGAAGACCTGTCTTGAAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCCGTAGTGAAGGTTGATGGTCGCATAATTGGCAATGGAGAAGTaggaccagtcactagaaggttgcaagctgcttataaaaagttgacagaacagtctggtgtacctATACCAACCTATCTTAAGACTTGAAAGACTGCAGTTGGAAGTGAGAGGAAAttgctgctgtacattactaaaagctacatatatggaagcatttttccctCTCGTATTAATTAATAAAATAGTGAAGAAGACCTTTTTCTCTCAGTTTTTTTGGGGGGAAGGGGGTATATCTAAATAAATATAGTACAATTTGCAAGTTTAAAAATGTAATTTAGTACAAATTTTATCATCGTCTCACGTTTTGCAACTTTTCGACAATAAATATCAATTCTCATGCGCTGTATTTCAGAGATGCAAGCGAAAAGTAGATAACGGGGATATGTGTTGTGACTTGTGAATTATGATAGAGAATTCTGTTCGATTTCTAAAACTGTACGAGTAGTGGATAGGAAAAAAATATTTTTCCATCCTTTGAGGGATTCAAACCCAATTTTATTCAAATCAACATAATGTTGATACTATTAAAAGAATTGTTTAGTAGCAAAAATTATTTTATTAATATATACAATTCTTTTTATATGC
>Glyma.03g240100.1 sequence-type=CDS polypeptide=Glyma.03g240100.1.p locus=Glyma.03g240100 ID=Glyma.03g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCTGATGGAGATAAGGTCACTAATGACATAATTTTTGCTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGATAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCAATGCTCAAGTGGGAAGCAGGTCCAAAGCCAATAGATGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGAGAAATTGCTTGCTTGGGTTGGTGATGAGATTGTGACACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCTGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTATATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTATTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATGGATCTTGTGGTGAAAGAACAATTAATCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCCGTAGTGAAGGTTGATGGTCGCATAATTGGCAATGGAGAAGTAGGACCAGTCACTAGAAGGTTGCAAGCTGCTTATAAAAAGTTGACAGAACAGTCTGGTGTACCTATACCAACCTATCTTAAGACTTGA >Glyma.03g240100.2 sequence-type=CDS polypeptide=Glyma.03g240100.2.p locus=Glyma.03g240100 ID=Glyma.03g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGAGAGTGAAGTGGAGGTGATTCATTCTTGGTCTGCTCCAAGATCCCTCAGTACTAGTCTCATGTATTCTTTTTCTCAGAGGGATGACATAGAAGTGCTTGATGAGCCCCTCTATGCAAATTTCCTTAGAGTAACTGGTCTTGATAGACCCTACAGGGAGGAGCTACTCTCCAAAATGGAAGCTGATGGAGATAAGGTCACTAATGACATAATTTTTGCTCCAGGAAAGAAGAAATATAGATTCTGTAAGCATATATCAAAGCAACGGTTACAAGGTTTGACAGATGATCTGATGAAGAAAGGAAAGCACTTCATTCTGATAAGAAATCCTCTTGATATATTGCCATCCTTTGATAAGGTTGTCCCTCCATCTTTCTATGAGTTGGGTTTGGCAGAGCTGGTTTGTATATACAACGAGCTTCGTGAAATTGGAAAGGCACCACCTGTTATTGATGCCGCAGAACTTCAACAAGATCCTGAGGCTACTCTACGCAGTCTCTGTAATGATTTGGAGATTCCTTTTCAATCTGCAATGCTCAAGTGGGAAGCAGGTCCAAAGCCAATAGATGGCTTGTGGGCCCCTTGGTGGTATAAGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTCCTTTACCTAATCCTGATCTTCCTGTTCCTGCAAACGAGAAATTGCTTGCTTGGGTTGGTGATGAGATTGTGACACGTGATAGTGCAAAGGTTTCTGTGTTTGATTCTGTTGTCCAAGGAGGTGACTCAGTTTGGGAAGGACTTCGAGTATATAATGGAAAGATATTTAAGCTTGAGGAGCATCTAGACAGGTTATTTGATTCAGCAAAAGCTTTAGCTTTTGAAAATGTTCCTACTCAAGATGAGATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAGGTTTCTTCTGGGATGAGTCCAGCTTTCAATCTTTATGGGTGTACATTAATTGTGCTTGCTGAATGGAAGCCCCCAGTATATGATAATACACGTGGTATAGTTCTTGTAACTGCTACAACACGCCGTAATTCACCAAATAATTTGGATTCGAAGATTCATCACAATAACCTTCTCAATAACATACTTGCAAAGATTGAAGGCAATAATGCAAAAGCAGATGATGCAATCATGCTCGACCAAGATGGTTATTTATCAGAAACCAATGCAACTAACATTTTTGTTGTTAAAAAGGGCCGTGTTTTGACCCCTCATGCTGATTACTGTCTTCCTGGCATTACTCGTGCAACTGTAATGGATCTTGTGGTGAAAGAACAATTAATCTTAGAGGAGCGCCGAATCAGCTTGTCAGAAGTGCATACTGCAGATGAGAAGACCTGTCTTGAAGGTATGGACGACTGGAACAATGGGAGAACTAAGCCCCGTAGTGAAGGTTGA
>Glyma.03g240100.1.p sequence-type=predicted peptide transcript=Glyma.03g240100.1 locus=Glyma.03g240100 ID=Glyma.03g240100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAESEVEVIHSWSAPRSLSTSLMYSFSQRDDIEVLDEPLYANFLRVTGLDRPYREELLSKMEADGDKVTNDIIFAPGKKKYRFCKHISKQRLQGLTDDLMKKGKHFILIRNPLDILPSFDKVVPPSFYELGLAELVCIYNELREIGKAPPVIDAAELQQDPEATLRSLCNDLEIPFQSAMLKWEAGPKPIDGLWAPWWYKSVHKSTGFEKPRKYPQPFPFSLYDLLEQSLPLYNMLRRHVKKKSSLLSPPLPNPDLPVPANEKLLAWVGDEIVTRDSAKVSVFDSVVQGGDSVWEGLRVYNGKIFKLEEHLDRLFDSAKALAFENVPTQDEIKEAIFRTLIRNGMFDNSHIRLSLTRGKKVSSGMSPAFNLYGCTLIVLAEWKPPVYDNTRGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNAKADDAIMLDQDGYLSETNATNIFVVKKGRVLTPHADYCLPGITRATVMDLVVKEQLILEERRISLSEVHTADEVWTTGTMGELSPVVKVDGRIIGNGEVGPVTRRLQAAYKKLTEQSGVPIPTYLKT* >Glyma.03g240100.2.p sequence-type=predicted peptide transcript=Glyma.03g240100.2 locus=Glyma.03g240100 ID=Glyma.03g240100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAESEVEVIHSWSAPRSLSTSLMYSFSQRDDIEVLDEPLYANFLRVTGLDRPYREELLSKMEADGDKVTNDIIFAPGKKKYRFCKHISKQRLQGLTDDLMKKGKHFILIRNPLDILPSFDKVVPPSFYELGLAELVCIYNELREIGKAPPVIDAAELQQDPEATLRSLCNDLEIPFQSAMLKWEAGPKPIDGLWAPWWYKSVHKSTGFEKPRKYPQPFPFSLYDLLEQSLPLYNMLRRHVKKKSSLLSPPLPNPDLPVPANEKLLAWVGDEIVTRDSAKVSVFDSVVQGGDSVWEGLRVYNGKIFKLEEHLDRLFDSAKALAFENVPTQDEIKEAIFRTLIRNGMFDNSHIRLSLTRGKKVSSGMSPAFNLYGCTLIVLAEWKPPVYDNTRGIVLVTATTRRNSPNNLDSKIHHNNLLNNILAKIEGNNAKADDAIMLDQDGYLSETNATNIFVVKKGRVLTPHADYCLPGITRATVMDLVVKEQLILEERRISLSEVHTADEKTCLEGMDDWNNGRTKPRSEG*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||