Report for Sequence Feature Glyma.03g240000
Feature Type: gene_model
Chromosome: Gm03
Start: 43874279
stop: 43877093
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.03g240000
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72210.1 AT
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
JGI N/A IEA
GO:0046983 GO-mf
protein dimerization activity
EnsemblGenomes N/A IEA
GO:0046983 GO-mf
protein dimerization activity
JGI N/A IEA
KOG2483
KOG
Upstream transcription factor 2/L-myc-2 protein
JGI N/A IEA
PTHR11534 Panther
MYOGENIC FACTOR
JGI N/A IEA
PTHR11534:SF7 Panther
JGI N/A IEA
PF00010 PFAM
Helix-loop-helix DNA-binding domain
JGI N/A IEA
Expression Patterns of Glyma.03g240000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.03g240000
Paralog Evidence Comments
Glyma.19g236900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.03g240000 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma03g39990 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.03g240000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.03g240000.2 sequence-type=transcript locus=Glyma.03g240000 ID=Glyma.03g240000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAAAGGGCCTTTAAAAGCTCAAAAATACTCCTCAATAGCATGCAACTTGGCATTTTTCGGGGCACCCACATAAAAATATTTTGCATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAGGACCCGTTTGGCCATGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAATTGGGGCTATGCAGATTTCAACCTTGAAAAAGAAGACCGAACTTGTGTCCCTTTTCTTGCGAACCAGACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCAATTGAATATTGCATCAAATCCTCAATCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCTGCTCGTCCCAAAAGGCGCAGGACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGTGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAAGCGAAATCTGATGTCCTCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCAGTGGTGGCTGTGACAATTCTACAGCCATGAGTGAGCAAAAGAGTGAGGCTCAGTCGGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATTGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACAACAGGGGAAATTGTCCTCTATTCTCTTAGCGTTAAGATTGCAAGCTAGGATCAGTGGATGAAATAGCTGCAGCGGTGTACCAAATTCTGGATAGGATTCAACAAGAGACAATCTCGAATTAAGATCTGAAGTTGAGCTAATTTGGCCCAATTTTTTTAACCTGATCAAGAAGACCTTATTATATTTCTTTCTCTTTTTTTCAAGTTGTACCTAATTATTGAAACGGCTGTGGATCCTGTTGTTATAATCTACTGAAGCGCCTTGATCGATGTGGGGGTCCTTGGAGGCAGTTTTTGGTTTATTCCTTCTTACATTGTCTTTCTAGCTACCTCTATTTTTTAtccctctctctctctctctctctGTACTTTGGGTGGAGAAGGTTGTAGTGTATATTGTATTGTGCTTGAGACACATTCAAGTGCTCTCAGCCAATTCTGTCTACCTTGCTTTAACAGTGGTAGGCCATTTCAATCTCAAACACTAGCCAATTTGTCAAGCCAAAATGCAGAATATCTCAAAGTCACTTTGAGTGAAAAAGATAGCCAAAGATATCAGGAGATTCACACATACTGTTAACTGTTTAGTCCATATTATTTTTCTCCCTTTTCTTTGGTTGTTACAAATTTTACTGCTAACCACTACCAGTTAAAATGAAAAAAAAATATATTACATAAAGAAAAACCGAATCTTATATTTGTTATTATCTCTTCATGGACAATAGCTGGAATAAGATAAACATCAATTAAGATTCATTAATAAGAGATCTGCTTCTCTTTTATTGCAAGGAATAAAATAGACATACGATTCCGATTTCTGAAGATTCTACAAAATTCCTAATGTTATCTAATTATAATCTGCTATGCGAAATGTTATCATTTATCAGAGTTTCTATTCTGAATTTATGATGATTTGACTCAAACATTATATTATATTGCTCTAGTAGATTCTGTAAAATTGATTAAATGAAAAACAATTGTGCATTGATTATATTATGGAGAAGAAAAACTGTTATGGACTTGCAGCGAAAGGAAGAAGACCCGTGTGCTCTACATGTGGAACTGTGTATTAGATGGGAACGTTACGTTGCGTTGCGGACCACAGGTTAAGAGCTAAATTTTCTCTGCATGCGTCGATTTTTTCATGTTTCACACTGAACGAAGAACGGTCCATCCTTATCATCATTAGGAAGCTGACTAAACTGATGAATCCAGGA
Coding sequences of Glyma.03g240000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.03g240000.1 sequence-type=CDS polypeptide=Glyma.03g240000.1.p locus=Glyma.03g240000 ID=Glyma.03g240000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAACTTGGCATTTTTCGGGGCACCCACATAAAAATATTTTGCATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAGGACCCGTTTGGCCATGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAATTGGGGCTATGCAGATTTCAACCTTGAAAAAGAAGACCGAACTTGTGTCCCTTTTCTTGCGAACCAGACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCAATTGAATATTGCATCAAATCCTCAATCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCTGCTCGTCCCAAAAGGCGCAGGACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGTGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAAGCGAAATCTGATGTCCTCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCAGTGGTGGCTGTGACAATTCTACAGCCATGAGTGAGCAAAAGAGTGAGGCTCAGTCGGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATTGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACAACAGGGGAAATTGTCCTCTATTCTCTTAGCGTTAAGGTGGAAGAAGATTGCAAGCTAGGATCAGTGGATGAAATAGCTGCAGCGGTGTACCAAATTCTGGATAGGATTCAACAAGAGACAATCTCGAATTAA
>Glyma.03g240000.2 sequence-type=CDS polypeptide=Glyma.03g240000.2.p locus=Glyma.03g240000 ID=Glyma.03g240000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAACTTGGCATTTTTCGGGGCACCCACATAAAAATATTTTGCATGTGTTTGCCTGAGGGAGAGAGAGGCATGGCACTAGAAGCAGTAGTGTATCCCCAACCACAGGACCCGTTTGGCCATGGAATCAAAGACCCTTCTTACAACTACAACAACTTGTTAGAAGGTGGTGGAGGCAATTGGGGCTATGCAGATTTCAACCTTGAAAAAGAAGACCGAACTTGTGTCCCTTTTCTTGCGAACCAGACAGAGAATTATCCTTATGGAGAATGGAACTGTTCTCCTTCTCCACCATCCATGTTGCCTCAATTGAATATTGCATCAAATCCTCAATCTTCAGAAACCAGCAACACACAGAACAACTTAGATAGTTCAGTTTCCACCCCTGCTCGTCCCAAAAGGCGCAGGACCAAAAGCAGAAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACTCACATTGCTGTAGAGCGCAACAGAAGGAAGCAAATGAACGAGTATCTCTCTGTTCTTCGCTCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATAATTGGTGGTGCTATCAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAAGCGAAATCTGATGTCCTCTTTTCTGAGTTCTTCTCCTTTCCACAGTACTCAACAAGTGCCAGTGGTGGCTGTGACAATTCTACAGCCATGAGTGAGCAAAAGAGTGAGGCTCAGTCGGGCATTGCTGACATAGAAGTGACAATGGTTGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGGCCAAAGCAGCTCTTGAAAATTGTCTCCAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAATGTTACCACAACAGGGGAAATTGTCCTCTATTCTCTTAGCGTTAAGATTGCAAGCTAG
Predicted protein sequences of Glyma.03g240000
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.03g240000.1.p sequence-type=predicted peptide transcript=Glyma.03g240000.1 locus=Glyma.03g240000 ID=Glyma.03g240000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLGIFRGTHIKIFCMCLPEGERGMALEAVVYPQPQDPFGHGIKDPSYNYNNLLEGGGGNWGYADFNLEKEDRTCVPFLANQTENYPYGEWNCSPSPPSMLPQLNIASNPQSSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEAKSDVLFSEFFSFPQYSTSASGGCDNSTAMSEQKSEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKVEEDCKLGSVDEIAAAVYQILDRIQQETISN*
>Glyma.03g240000.2.p sequence-type=predicted peptide transcript=Glyma.03g240000.2 locus=Glyma.03g240000 ID=Glyma.03g240000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQLGIFRGTHIKIFCMCLPEGERGMALEAVVYPQPQDPFGHGIKDPSYNYNNLLEGGGGNWGYADFNLEKEDRTCVPFLANQTENYPYGEWNCSPSPPSMLPQLNIASNPQSSETSNTQNNLDSSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEAKSDVLFSEFFSFPQYSTSASGGCDNSTAMSEQKSEAQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLSVKIAS*