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Report for Sequence Feature Glyma.03g235600

Feature Type:gene_model
Chromosome:Gm03
Start:43573361
stop:43577019
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g235600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G05510.1AT Phospholipid/glycerol acyltransferase family protein JGI N/AIEA
GO:0006644GO-bp phospholipid metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0031224GO-cc intrinsic component of membrane EnsemblGenomesN/AIEA
GO:0008374GO-mf O-acyltransferase activity EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups EnsemblGenomesN/AIEA
GO:0016746GO-mf transferase activity, transferring acyl groups JGI N/AIEA
KOG2847 KOG Phosphate acyltransferase JGI N/AIEA
PTHR12497Panther TAZ PROTEIN (TAFAZZIN) JGI N/AIEA
PF01553PFAM Acyltransferase JGI N/AIEA
PWY-6803SoyCyc9 phosphatidylcholine acyl editing Plant Metabolic Network ISS
PWY-7416SoyCyc9 phospholipid remodeling (phosphatidylcholine, yeast) Plant Metabolic Network ISS
TRIGLSYN-PWYSoyCyc9 diacylglycerol and triacylglycerol biosynthesis Plant Metabolic Network ISS
GN7V-64994SoyCyc9-rxn phospholipid:diacylglycerol acyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g235600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g235600
ParalogEvidenceComments
Glyma.19g233400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g235600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g39540 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g235600
>Glyma.03g235600.1 sequence-type=CDS polypeptide=Glyma.03g235600.1.p locus=Glyma.03g235600 ID=Glyma.03g235600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCCTTCTCGATCGCGGCGATGTTTGGAAGAGCAAGGCGCGATCCTTGCAGCTACAGCTCAGGGACCGTTTCCGTGTCGCCGTCGACCGCCATTGGCGCCGCCGCCACAACCACCACACCTTTATCCCCTCCGCCGATGGCTACTTCTCCTCCACCATTCAACGCTGGCTCAGCCGATTTCGTGATTTCCGCAGAGACTCGTTGCCGTCGTCCACCTCTTTTTATCGCAAACGAGTGATTAAGGATTTCAGTTCTGAAGAAGATTCAACTCTTGTTCGTATGATGCAAGCTGTTGCGGTTCCTGTTCTTGGAAATGTCTGTCACGTGTTTATGAACGGATTAAACAGTGTGCAGGTATATGGTTTAGAAAAACTGCACTCCGCTTTACTGCAAAGACCTAAAGGAAAACCTCTTCTTACGGTCAGCAATCATGTTGCTTCCATGGATGATCCTCTTGTTATTGCTTCGCTGCTTCCTCCGAGTGTTCTTTTGGACGCTAGGAATCTCAGATGGACGCTTTGCGCAACTGATAGGTGTTTTAAAAACCCTGTGACTTCTGCATTCTTTCGATCAGTCAAAGTTTTGCCAGTTTCTCGGGGTGATGGCATTTATCAGGAGGGAATGGACTTGGCCATATCAAAATTGAACCATGGTGGTTGGGTCCACATATTCCCAGAAGGCAGTCGCTCCCGGGATGGTGGAAAAACCATGGGCTCTTCCAAGAGAGGTGTTGGGAGGTTAGTCCTGGATGGAGATAGCATGCCTCTTGTTGTCCCATTTGTACATACAGGGATGCAGGAGATTATGCCTGTAGGTGCTAACTTTCCCAGAATAGGCAAGATGGTTACAGTGCTCATAGGTGATCCGATCAATTTTGATGATATAATTGAATTTGACAAAGACAAAGGCTCAAATGTGCCCAGAAGACGACTATATGATGCAGTAGCATCTAGAATTGGTGATCGGTTGCATGAGATGAAGGTCCAGGTTGACACTATCGCAATTGATCAAGAAATGCAGCTACAAGATAAGTCCTCACACAGCACTGAACGAACATCTAAAATACTGCAGCAGGTTGATTGGGAATTATTTGGAATGGATAGCTTCATGTCTGTAGAAGATGATTCCAAGCAGAGACAAGAAACAGTTGCCCTCTCAAATGTTAGTGTTTCTCAGCATCATCAACAATCTCATAGTGATCAGAGTTGGAGAGCTGGGTTCTCATACAGGATGCGTGGTTATATTGATCAGATGGAGCTTGTGTCTTTTGCTGCGAGAGGTATATTTCTGAATAATGATACAAAGAACTCTGCTCGCCCTAGCAGAGAGATGGGCCCCTTAAAGGCATGGAAGCAGTTTTTGGAAGCTAATCTATTAAGGCAGTGGAATTACGTCCATTACTGA
Predicted protein sequences of Glyma.03g235600
>Glyma.03g235600.1.p sequence-type=predicted peptide transcript=Glyma.03g235600.1 locus=Glyma.03g235600 ID=Glyma.03g235600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPLLDRGDVWKSKARSLQLQLRDRFRVAVDRHWRRRHNHHTFIPSADGYFSSTIQRWLSRFRDFRRDSLPSSTSFYRKRVIKDFSSEEDSTLVRMMQAVAVPVLGNVCHVFMNGLNSVQVYGLEKLHSALLQRPKGKPLLTVSNHVASMDDPLVIASLLPPSVLLDARNLRWTLCATDRCFKNPVTSAFFRSVKVLPVSRGDGIYQEGMDLAISKLNHGGWVHIFPEGSRSRDGGKTMGSSKRGVGRLVLDGDSMPLVVPFVHTGMQEIMPVGANFPRIGKMVTVLIGDPINFDDIIEFDKDKGSNVPRRRLYDAVASRIGDRLHEMKVQVDTIAIDQEMQLQDKSSHSTERTSKILQQVDWELFGMDSFMSVEDDSKQRQETVALSNVSVSQHHQQSHSDQSWRAGFSYRMRGYIDQMELVSFAARGIFLNNDTKNSARPSREMGPLKAWKQFLEANLLRQWNYVHY*






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