SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.03g234400

Feature Type:gene_model
Chromosome:Gm03
Start:43492010
stop:43493810
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g234400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26750.1AT alpha/beta-Hydrolases superfamily protein JGI N/AIEA
AT3G05600.1AT alpha/beta-Hydrolases superfamily protein JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
KOG4178 KOG Soluble epoxide hydrolase JGI N/AIEA
PTHR10992Panther ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN JGI N/AIEA
PTHR10992:SF279Panther JGI N/AIEA
PF00561PFAM alpha/beta hydrolase fold JGI N/AIEA
GN7V-55175SoyCyc9-rxn soluble epoxide hydrolase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g234400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g234400
ParalogEvidenceComments
Glyma.19g231800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g234400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g39400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g234400
>Glyma.03g234400.2 sequence-type=transcript locus=Glyma.03g234400 ID=Glyma.03g234400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
gcaaatggaacgaaagaggaggaggggttttatagggaggtgtggaaggaagtgcctagcagaccaccacgtgtggtcacgcctgacagaccaccacgtgtggtcgcacctgacagaccaccacttcctagcccatttcgaggaatgcgcccaacggagaagcgccttgtagtataaaaagaaaccgacaaagtaaataatttcaaaacagactcatctagCCGAGTGGCTATCATTGTAGTTTTATCGCTCTGCAAAGAGAGAGGGAGATGGAGGGAATAGAGCACAGGACAGTTGAAGTAAATGGCATAAAAATGCACATTGCAGAGAAAGGAGAAGGCCCTGTGGTGTTGTTTCTCCACGGCTTCCCCGAACTCTGGCACTGTTGGCACAACCAGATTGTGGCTCTTGGTTCCCTCGGATACCATGCGGTGGCACCAGATCTCCGAGGCTACGAGCAAGTGTTCCTTGTGGCTCATGACTGGGGAGCCATCATAGGTTGGTACCTCTGCATGTTTCGCCCTGACAAAGTGAAGGCCTATGTCTGCCTCAGTGTTCCTTTCATCCGCAGAAACCCCAACGTCAGAACCGTCGATGGCATGCGCGCTATGTATGGAGAAGACTACTATATCTGCAGATTTCAGAAACCAGGGGAAATGGAGGCTCAGATGGCTCAAGTTGGCACAGAGTATGTTCTCAAAAACATCCTTACAATTCGCAAACCTGGACCTCCAATCTTTCCCAAAGGAGAGTTTGGAACAGGATTAAATCCGAATATGTCTGATGATACCTTACCCTCTTGGCTCACAGACGATGATCTTGCCTATTATGTTTCCAAATATGAGAAATCGGGCTTCACTGGACCCTTGAACTATTACCGAAATATGAACTTAAATTGGGAGCTGACGGCACCATGGACTGGAGTGCAAATCCAAGTGGCGGTAAAATACATAACAGGTGAGTTGGACATGGTATACACCTCGCTAGGCATGAAGGAGTATGTCCACAGTGGAGGTTTCAAACAAGATGTGCCCAATTTACAAGTGGTTGTGCAGAAAGGAGTAGCTCACTTCAATAATCTAGAAGCTGCCGAGGAAATCAACAATCACATATACGATTTCATCAACAAGTTTTGATGATCTGAGATTCAGGAACACGGTCACAGGGGTCGTGTAAATTAGTTGAAGTTGCGCTTTAAGGTATCAAGATATCTATTTTGATTTTTGATGAGTCCATTATCTGCAGACAACCTCATCCATCCAACCTTGATGCTTTTGTGTAATAATACATTCGTACCTACCCGTTAAAACTTCAGAAAATAAAATTTCGATCTTGCCATGCAATCATTAATTAGTTATAGCATATTTCCATCAA

>Glyma.03g234400.3 sequence-type=transcript locus=Glyma.03g234400 ID=Glyma.03g234400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
gcaaatggaacgaaagaggaggaggggttttatagggaggtgtggaaggaagtgcctagcagaccaccacgtgtggtcacgcctgacagaccaccacgtgtggtcgcacctgacagaccaccacttcctagcccatttcgaggaatgcgcccaacggagaagcgccttgtagtataaaaagaaaccgacaaagtaaataatttcaaaacagactcatctagCCGAGTGGCTATCATTGTAGTTTTATCGCTCTGCAAAGAGAGAGGGAGATGGAGGGAATAGAGCACAGGACAGTTGAAGTAAATGGCATAAAAATGCACATTGCAGAGAAAGGAGAAGGCCCTGTGGTGTTGTTTCTCCACGGCTTCCCCGAACTCTGGCACTGTTGGCACAACCAGATTGTGGCTCTTGGTTCCCTCGGATACCATGCGGTGGCACCAGATCTCCGAGGCTACGGTGACACCGATGCACCACCTTCAATAGACAGCTACACATGCTTTCATATAGTGGCTGATCTCGTTGCGCTTATTGATTCTCTTGGTGCAGAGCAAGTGTTCCTTGTGGCTCATGACTGGGGAGCCATCATAGGTTGGTACCTCTGCATGTTTCGCCCTGACAAAGTGAAGGCCTATGTCTGCCTCAGTGTTCCTTTCATCCGCAGAAACCCCAACGTCAGAACCGTCGATGGCATGCGCGCTATGTATGGAGAAGACTACTATATCTGCAGATTTCAGAAACCAGGGGAAATGGAGGCTCAGATGGCTCAAGTTGGCACAGAAAATTGGGAGCTGACGGCACCATGGACTGGAGTGCAAATCCAAGTGGCGGTAAAATACATAACAGGTGAGTTGGACATGGTATACACCTCGCTAGGCATGAAGGAGTATGTCCACAGTGGAGGTTTCAAACAAGATGTGCCCAATTTACAAGTGGTTGTGCAGAAAGGAGTAGCTCACTTCAATAATCTAGAAGCTGCCGAGGAAATCAACAATCACATATACGATTTCATCAACAAGTTTTGATGATCTGAGATTCAGGAACACGGTCACAGGGGTCGTGTAAATTAGTTGAAGTTGCGCTTTAAGGTATCAAGATATCTATTTTGATTTTTGATGAGTCCATTATCTGCAGACAACCTCATCCATCCAACCTTGATGCTTTTGTGTAATAATACATTCGTACCTACCCGTTAAAACTTCAGAAAATAAAATTTCGATCTTGCCATGCAATCATTAATTAGTTATAGCATATTTCCATCAA
Coding sequences of Glyma.03g234400
>Glyma.03g234400.1 sequence-type=CDS polypeptide=Glyma.03g234400.1.p locus=Glyma.03g234400 ID=Glyma.03g234400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGAATAGAGCACAGGACAGTTGAAGTAAATGGCATAAAAATGCACATTGCAGAGAAAGGAGAAGGCCCTGTGGTGTTGTTTCTCCACGGCTTCCCCGAACTCTGGCACTGTTGGCACAACCAGATTGTGGCTCTTGGTTCCCTCGGATACCATGCGGTGGCACCAGATCTCCGAGGCTACGGTGACACCGATGCACCACCTTCAATAGACAGCTACACATGCTTTCATATAGTGGCTGATCTCGTTGCGCTTATTGATTCTCTTGGTGCAGAGCAAGTGTTCCTTGTGGCTCATGACTGGGGAGCCATCATAGGTTGGTACCTCTGCATGTTTCGCCCTGACAAAGTGAAGGCCTATGTCTGCCTCAGTGTTCCTTTCATCCGCAGAAACCCCAACGTCAGAACCGTCGATGGCATGCGCGCTATGTATGGAGAAGACTACTATATCTGCAGATTTCAGAAACCAGGGGAAATGGAGGCTCAGATGGCTCAAGTTGGCACAGAGTATGTTCTCAAAAACATCCTTACAATTCGCAAACCTGGACCTCCAATCTTTCCCAAAGGAGAGTTTGGAACAGGATTAAATCCGAATATGTCTGATGATACCTTACCCTCTTGGCTCACAGACGATGATCTTGCCTATTATGTTTCCAAATATGAGAAATCGGGCTTCACTGGACCCTTGAACTATTACCGAAATATGAACTTAAATTGGGAGCTGACGGCACCATGGACTGGAGTGCAAATCCAAGTGGCGGTAAAATACATAACAGGTGAGTTGGACATGGTATACACCTCGCTAGGCATGAAGGAGTATGTCCACAGTGGAGGTTTCAAACAAGATGTGCCCAATTTACAAGTGGTTGTGCAGAAAGGAGTAGCTCACTTCAATAATCTAGAAGCTGCCGAGGAAATCAACAATCACATATACGATTTCATCAACAAGTTTTGA

>Glyma.03g234400.2 sequence-type=CDS polypeptide=Glyma.03g234400.2.p locus=Glyma.03g234400 ID=Glyma.03g234400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGAATAGAGCACAGGACAGTTGAAGTAAATGGCATAAAAATGCACATTGCAGAGAAAGGAGAAGGCCCTGTGGTGTTGTTTCTCCACGGCTTCCCCGAACTCTGGCACTGTTGGCACAACCAGATTGTGGCTCTTGGTTCCCTCGGATACCATGCGGTGGCACCAGATCTCCGAGGCTACGAGCAAGTGTTCCTTGTGGCTCATGACTGGGGAGCCATCATAGGTTGGTACCTCTGCATGTTTCGCCCTGACAAAGTGAAGGCCTATGTCTGCCTCAGTGTTCCTTTCATCCGCAGAAACCCCAACGTCAGAACCGTCGATGGCATGCGCGCTATGTATGGAGAAGACTACTATATCTGCAGATTTCAGAAACCAGGGGAAATGGAGGCTCAGATGGCTCAAGTTGGCACAGAGTATGTTCTCAAAAACATCCTTACAATTCGCAAACCTGGACCTCCAATCTTTCCCAAAGGAGAGTTTGGAACAGGATTAAATCCGAATATGTCTGATGATACCTTACCCTCTTGGCTCACAGACGATGATCTTGCCTATTATGTTTCCAAATATGAGAAATCGGGCTTCACTGGACCCTTGAACTATTACCGAAATATGAACTTAAATTGGGAGCTGACGGCACCATGGACTGGAGTGCAAATCCAAGTGGCGGTAAAATACATAACAGGTGAGTTGGACATGGTATACACCTCGCTAGGCATGAAGGAGTATGTCCACAGTGGAGGTTTCAAACAAGATGTGCCCAATTTACAAGTGGTTGTGCAGAAAGGAGTAGCTCACTTCAATAATCTAGAAGCTGCCGAGGAAATCAACAATCACATATACGATTTCATCAACAAGTTTTGA

>Glyma.03g234400.3 sequence-type=CDS polypeptide=Glyma.03g234400.3.p locus=Glyma.03g234400 ID=Glyma.03g234400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGGAATAGAGCACAGGACAGTTGAAGTAAATGGCATAAAAATGCACATTGCAGAGAAAGGAGAAGGCCCTGTGGTGTTGTTTCTCCACGGCTTCCCCGAACTCTGGCACTGTTGGCACAACCAGATTGTGGCTCTTGGTTCCCTCGGATACCATGCGGTGGCACCAGATCTCCGAGGCTACGGTGACACCGATGCACCACCTTCAATAGACAGCTACACATGCTTTCATATAGTGGCTGATCTCGTTGCGCTTATTGATTCTCTTGGTGCAGAGCAAGTGTTCCTTGTGGCTCATGACTGGGGAGCCATCATAGGTTGGTACCTCTGCATGTTTCGCCCTGACAAAGTGAAGGCCTATGTCTGCCTCAGTGTTCCTTTCATCCGCAGAAACCCCAACGTCAGAACCGTCGATGGCATGCGCGCTATGTATGGAGAAGACTACTATATCTGCAGATTTCAGAAACCAGGGGAAATGGAGGCTCAGATGGCTCAAGTTGGCACAGAAAATTGGGAGCTGACGGCACCATGGACTGGAGTGCAAATCCAAGTGGCGGTAAAATACATAACAGGTGAGTTGGACATGGTATACACCTCGCTAGGCATGAAGGAGTATGTCCACAGTGGAGGTTTCAAACAAGATGTGCCCAATTTACAAGTGGTTGTGCAGAAAGGAGTAGCTCACTTCAATAATCTAGAAGCTGCCGAGGAAATCAACAATCACATATACGATTTCATCAACAAGTTTTGA
Predicted protein sequences of Glyma.03g234400
>Glyma.03g234400.1.p sequence-type=predicted peptide transcript=Glyma.03g234400.1 locus=Glyma.03g234400 ID=Glyma.03g234400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGIEHRTVEVNGIKMHIAEKGEGPVVLFLHGFPELWHCWHNQIVALGSLGYHAVAPDLRGYGDTDAPPSIDSYTCFHIVADLVALIDSLGAEQVFLVAHDWGAIIGWYLCMFRPDKVKAYVCLSVPFIRRNPNVRTVDGMRAMYGEDYYICRFQKPGEMEAQMAQVGTEYVLKNILTIRKPGPPIFPKGEFGTGLNPNMSDDTLPSWLTDDDLAYYVSKYEKSGFTGPLNYYRNMNLNWELTAPWTGVQIQVAVKYITGELDMVYTSLGMKEYVHSGGFKQDVPNLQVVVQKGVAHFNNLEAAEEINNHIYDFINKF*

>Glyma.03g234400.2.p sequence-type=predicted peptide transcript=Glyma.03g234400.2 locus=Glyma.03g234400 ID=Glyma.03g234400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGIEHRTVEVNGIKMHIAEKGEGPVVLFLHGFPELWHCWHNQIVALGSLGYHAVAPDLRGYEQVFLVAHDWGAIIGWYLCMFRPDKVKAYVCLSVPFIRRNPNVRTVDGMRAMYGEDYYICRFQKPGEMEAQMAQVGTEYVLKNILTIRKPGPPIFPKGEFGTGLNPNMSDDTLPSWLTDDDLAYYVSKYEKSGFTGPLNYYRNMNLNWELTAPWTGVQIQVAVKYITGELDMVYTSLGMKEYVHSGGFKQDVPNLQVVVQKGVAHFNNLEAAEEINNHIYDFINKF*

>Glyma.03g234400.3.p sequence-type=predicted peptide transcript=Glyma.03g234400.3 locus=Glyma.03g234400 ID=Glyma.03g234400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGIEHRTVEVNGIKMHIAEKGEGPVVLFLHGFPELWHCWHNQIVALGSLGYHAVAPDLRGYGDTDAPPSIDSYTCFHIVADLVALIDSLGAEQVFLVAHDWGAIIGWYLCMFRPDKVKAYVCLSVPFIRRNPNVRTVDGMRAMYGEDYYICRFQKPGEMEAQMAQVGTENWELTAPWTGVQIQVAVKYITGELDMVYTSLGMKEYVHSGGFKQDVPNLQVVVQKGVAHFNNLEAAEEINNHIYDFINKF*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo