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Report for Sequence Feature Glyma.03g229800

Feature Type:gene_model
Chromosome:Gm03
Start:43172457
stop:43175687
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g229800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56600.1AT galactinol synthase 2 JGI N/AIEA
GO:0006012GO-bp galactose metabolic process EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups JGI N/AIEA
GO:0047216GO-mf inositol 3-alpha-galactosyltransferase activity EnsemblGenomesN/AIEA
KOG1950 KOG Glycosyl transferase, family 8 - glycogenin JGI N/AIEA
PTHR11183Panther GLYCOGENIN JGI N/AIEA
PTHR11183:SF2Panther JGI N/AIEA
PF01501PFAM Glycosyl transferase family 8 JGI N/AIEA
PWY-5337SoyCyc9 stachyose biosynthesis Plant Metabolic Network ISS
GN7V-62267SoyCyc9-rxn inositol 3-α-galactosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.03g229800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g229800
ParalogEvidenceComments
Glyma.19g227800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g229800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g38910 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g229800
>Glyma.03g229800.1 sequence-type=CDS polypeptide=Glyma.03g229800.1.p locus=Glyma.03g229800 ID=Glyma.03g229800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCACCTAACATCACCACCGTTGTTGCCAATGCCACCACTGAGCAATTACCCAAAGCTCATGGAGGAAGTAGTGGGCGTGCCTTTGTGACTTTTCTTGCTGGAAACGGTGATTATGTAAAGGGTGTTGTGGGTTTGGCCAAAGGACTGAGAAAGGCCAAAAGCATGTACCCTTTGGTGGTTGCTGTGTTACCAGATGTTCCTGAAGAACATCGTGCGATTCTCAAATCCCAAGGTTGCATTGTCAGGGAGATTGAACCTGTGTACCCTCCTAAGAACCAGACCCAGTTCGCCATGGCCTATTATGTCATCAATTACTCCAAGCTACGTATTTGGGAGTTCGTGGAGTACCAGAAGATGATATACCTAGACGGCGACATCCAAGTTTTTGGAAACATTGACCACTTGTTTGATCTTCCTAATAATTATTTCTATGCGGTGATGGATTGTTTCTGCGAGAAGACTTGGAGCCACACCCCTCAGTTCCAGATTGGGTACTGCCAACAGTGCCCTGATAAGGTTCAATGGCCCTCTCACTTTGGTACCAAACCTCCTCTATATTTCAATGCTGGCATGTTTGTTTATGAGCCTAATCTCAACACCTACCGTCATCTTCTCCAAACTGTCCAAGTCATCAAGCCCACGTCCTTTGCTGAGCAGGACTTTCTGAACATGTACTTCAAGGACAAGTACAAGCCAATACCGAACGTGTACAACCTTGTGCTGGCCATGTTGTGGCGTCACCCTGAGAATGTTGAACTTGATCAAGTTCAAGTGGTTCATTACTGTGCTGCTGGGTCTAAGCCTTGGAGGTTCACTGGGAAGGAAGAGAACATGGATAGGGAAGATATCAAGATGCTTATGAAGAAGTGGTGGGACATATATGAAGATGAGACACTGGACTACAATAACAACTCTGTCAATGTGGAACGTTTCACATCAGTACTATTGGATGCTGGGGGTTTTCAGTTTGTGCCAGCACCTTCTGCTGCCTAA
Predicted protein sequences of Glyma.03g229800
>Glyma.03g229800.1.p sequence-type=predicted peptide transcript=Glyma.03g229800.1 locus=Glyma.03g229800 ID=Glyma.03g229800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPNITTVVANATTEQLPKAHGGSSGRAFVTFLAGNGDYVKGVVGLAKGLRKAKSMYPLVVAVLPDVPEEHRAILKSQGCIVREIEPVYPPKNQTQFAMAYYVINYSKLRIWEFVEYQKMIYLDGDIQVFGNIDHLFDLPNNYFYAVMDCFCEKTWSHTPQFQIGYCQQCPDKVQWPSHFGTKPPLYFNAGMFVYEPNLNTYRHLLQTVQVIKPTSFAEQDFLNMYFKDKYKPIPNVYNLVLAMLWRHPENVELDQVQVVHYCAAGSKPWRFTGKEENMDREDIKMLMKKWWDIYEDETLDYNNNSVNVERFTSVLLDAGGFQFVPAPSAA*






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