SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09420.1 | AT | glucose-6-phosphate dehydrogenase 4 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006006 | GO-bp | glucose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0006006 | GO-bp | glucose metabolic process | JGI | N/A | IEA |
| GO:0006098 | GO-bp | pentose-phosphate shunt | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0004345 | GO-mf | glucose-6-phosphate dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0004345 | GO-mf | glucose-6-phosphate dehydrogenase activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0050661 | GO-mf | NADP binding | EnsemblGenomes | N/A | IEA |
| GO:0050661 | GO-mf | NADP binding | JGI | N/A | IEA |
| KOG0563 | KOG | Glucose-6-phosphate 1-dehydrogenase | JGI | N/A | IEA |
| PTHR23429 | Panther | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD) | JGI | N/A | IEA |
| PF00479 | PFAM | Glucose-6-phosphate dehydrogenase, NAD binding domain | JGI | N/A | IEA |
| PF02781 | PFAM | Glucose-6-phosphate dehydrogenase, C-terminal domain | JGI | N/A | IEA |
| OXIDATIVEPENT-PWY | SoyCyc9 | pentose phosphate pathway (oxidative branch) I | Plant Metabolic Network | ISS | |
| PENTOSE-P-PWY | SoyCyc9 | pentose phosphate pathway | Plant Metabolic Network | ISS | |
| GN7V-63790 | SoyCyc9-rxn | glucose-6-phosphate dehydrogenase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| G6PDH1 | Glucose-6-phosphate dehydrogenase gene 1 |
|
Glyma.03g229400 not represented in the dataset |
Glyma.03g229400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g226700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g38870 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g229400.1 sequence-type=CDS polypeptide=Glyma.03g229400.1.p locus=Glyma.03g229400 ID=Glyma.03g229400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTGTGTCTTTCTCTTCAACCTCGGTTTCGTTCTCGGAATCCTCATTTGCATTCCAAAGACCTGCTCCAGCACATCTTTGCTCAAATTCACTCACCGTTGCATCGAACAACTTTCATTCAGCAACAGGTGGTGGTCGTCTTGTGCTGAATGTTGGAGGCACCTGCTTGTGTCGAAAGTTTCGTGGTTTGAAACTGTGGCTACTTGAGAGACTCAGCTTCCAATTCCAGCCACCAAAGCAACCTAAGAATAGAAACCATCACTTCAGGAATAATTTGGAAAATGAAAAGGGATCGGTTTCTGATTCATCTTCAAATCTTCGTGTTCCTGATGATAAGGTCACTCCGGTGGAGTCTCTATCGTTGCTGCAGACAGGTTTGTCTGGTACTCCCGTGGATGTTGGCAGAAAGCCCTCACTTTGTATTGCTGTCATAGGAGCCACCGGTGAGCTGGCAAAGAGGAAGATTTTCCCTGCTTTGTTTGCCCTCTACTACAGTGGCTTTCTTCCCGAGAATGTAGGCATTTTTGGTTATTCAAGGAAGGATATAACTGATGAAGACCTGCGATCTATTATAGCTTCAACATTAACATGCCGAGTTGATCATCAAGAAAATTGTGACAACAAATTAGATGCTTTCCTTAGTAAAACATATTACATTAATGGAGGCTATGACAATAAATATGGGATGTCCATGCTGAATTCTCGAATGGAGCAAATTGAGGGAGGATCCAAAACCAACAGGATATTCTACCTTTCTGTGCCACAAGAAGCACTTTTGGATGTTGCTTCATGCCTTGCAAGCAGTGCTCAGACCCAGAATGGATGGAATCGCATAATATTTGAGAAGCCATTTGGCTTTGATGCACGTTCTTCCGATAGGCTGACACAATATATTCTTTCAAACTTTCAGGAAAAGCAAATATTTAGGATTGATCATCTACTAGGAAGGAATCTCATTGAAAATCTTACAGTTTTAAGGTTTTCAAATCTAGTTTTTGAGCCACTTTGGAGTCGTACTTACATAGATAATGTACAGGTCATTTTATCAGAGGACTTGGGTGTGCATCCAGGAAGATATTTCAGTGGCTACGGAATTATCCGTGATATTGTTCACTGTCATGTGCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAATAAGCCTTGATGGAGAAGATATTAGAAATGAAAAGCTCAAGGTTTTGAGGTTAATTCGCAAATTGGAGCCGAAGGATGTCATTCTTGGCCAATATAAAGCAAGTGGTGGAGCCAAAGTTGATGCATGCGTAAATGGTCTGACACCTACTTATTTTGCTGCTGCACTATACATTGACAATGCACGATGGGATGGTGTGCCATTTCTGATTAAAACAGGCTTGGGGCTCATCAAACACCAAATGGAGATTCGGATTCAATTTCGCAATGTTCCGGGGAATGTATACCATGAGTGCATCGGGCATAACAGGGACCGTGCCATAAATGAACTCATTCTTCGGGATGTTCCTGATGAAGCTATTTTGGTGAGAGTGAACAATAAGGTTCCAGGACTAGGCCTGCAACTGGACTCTTCAGAATTAAATTTGCTTTACAAGGACAAGTACAACATGGAGGTGCCGGATTCATACGAGCATCTTCTTCTGGATGTCATTGATGGAGACAACCATTTGTTTATGAGAAGTGATGAGTTGGCAGCAGCGTGGACCATTCTAACTCCAATTCTGAATGAGATAGACAAGAACAATATGTCAGTGGAGCTTTATGAGATGGGGGGTCGCGGTCCTATTGGGGCATACTACCTCTGGGCGAAACATGGTGTCCGTTGGGTGGAGGATTAA
>Glyma.03g229400.1.p sequence-type=predicted peptide transcript=Glyma.03g229400.1 locus=Glyma.03g229400 ID=Glyma.03g229400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSVSFSSTSVSFSESSFAFQRPAPAHLCSNSLTVASNNFHSATGGGRLVLNVGGTCLCRKFRGLKLWLLERLSFQFQPPKQPKNRNHHFRNNLENEKGSVSDSSSNLRVPDDKVTPVESLSLLQTGLSGTPVDVGRKPSLCIAVIGATGELAKRKIFPALFALYYSGFLPENVGIFGYSRKDITDEDLRSIIASTLTCRVDHQENCDNKLDAFLSKTYYINGGYDNKYGMSMLNSRMEQIEGGSKTNRIFYLSVPQEALLDVASCLASSAQTQNGWNRIIFEKPFGFDARSSDRLTQYILSNFQEKQIFRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIDNVQVILSEDLGVHPGRYFSGYGIIRDIVHCHVLQTIALLAMEPPISLDGEDIRNEKLKVLRLIRKLEPKDVILGQYKASGGAKVDACVNGLTPTYFAAALYIDNARWDGVPFLIKTGLGLIKHQMEIRIQFRNVPGNVYHECIGHNRDRAINELILRDVPDEAILVRVNNKVPGLGLQLDSSELNLLYKDKYNMEVPDSYEHLLLDVIDGDNHLFMRSDELAAAWTILTPILNEIDKNNMSVELYEMGGRGPIGAYYLWAKHGVRWVED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
