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Report for Sequence Feature Glyma.03g227300

Feature Type:gene_model
Chromosome:Gm03
Start:42918771
stop:42923401
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g227300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09570.1AT phytochrome A JGI N/AIEA
GO:0000160GO-bp phosphorelay signal transduction system EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction JGI N/AIEA
GO:0009584GO-bp detection of visible light EnsemblGenomesN/AIEA
GO:0009584GO-bp detection of visible light JGI N/AIEA
GO:0018298GO-bp protein-chromophore linkage EnsemblGenomesN/AIEA
GO:0018298GO-bp protein-chromophore linkage JGI N/AIEA
GO:0023014GO-bp signal transduction by protein phosphorylation EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0000155GO-mf phosphorelay sensor kinase activity EnsemblGenomesN/AIEA
GO:0000155GO-mf phosphorelay sensor kinase activity JGI N/AIEA
GO:0004871GO-mf signal transducer activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
PF00360PFAM Phytochrome region JGI N/AIEA
PF00512PFAM His Kinase A (phospho-acceptor) domain JGI N/AIEA
PF00989PFAM PAS fold JGI N/AIEA
PF01590PFAM GAF domain JGI N/AIEA
PF08446PFAM PAS fold JGI N/AIEA

Expression Patterns of Glyma.03g227300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g227300
ParalogEvidenceComments
Glyma.19g224200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g227300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g38620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g227300
>Glyma.03g227300.1 sequence-type=CDS polypeptide=Glyma.03g227300.1.p locus=Glyma.03g227300 ID=Glyma.03g227300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAATTCTTGTTTACGTACTCGGCATGATGTTTCTGTCGTTTCCTGGTCAATTAAGATCATCAAGACCCAGTGCTAGGAGGATATCTCAGACAAGTTTAGATGCAAAACCGCATGCAACATTTGAGGAATCAGGTAGTTCTTTTGACTACTCGAATTCAGTGAAAATGTCTCCAGCTGGTACAGGAGGAGGCACTGTCAGTGGAGAGCATGAACCAAAGTCTGATAGAGCAGCAACAACTGCTTACCTCCATCAGATGCAGAAAGGCAAGCTTATTCAGCCATTTGGGTGCTTGTTGGTCTTAGATGAGAAAACATATAAGGTCATCGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGCTAGTCATGCTGTCCCCAGTGTTGATGACCACCCTGCTCTTGACATTGGCACTTACATAAGGACTATTTTCACTGCCCCAAGTATTGCTTCTATTCACAAGGTACTTGGATTTGGGGATCTTTCACTTCATAACACCATTCTAGTCCATTGCAAGACCTTTGGGAATCCCTTTTACGCAATTATCCATCTTGTTACCGGTAGCACAATCATCGATTTTGAGTCGGTCCAGCCTCCTGAAGTTCCCATGACTGCATCCGGTTCCCTGCAATCCTACTACAAGCTTGCAGCAAAAGCAACAACTAGATTGCAATCCTTGGCTACTGTGAACATGGAAACACTATGTAACACAATGGTTCAAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTCCATGACGATGATCATGGGGAAGTGATTGCTGAGGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCCCATGCGACGCGCTTTTCTTTATGGAGAACAAGGTGCGTGATTCAAGACAAAAAAATTCCATTTGATTTAGCTTTGTATGGATCAACCTTGAGGGCTGCTCATAGTTGCCACTTGCAATTCATGGTGAACATGAATTCTAGTGCTTCCTTGGTATTGGCAGTTGTGATCAATGACAATGATGAAGATGGGAATAGTTCTGATGATGCTGCTGTTCAGCAGCCACACAAGAGTAGTACGAGTCTATGGGGTTTAGTAGTTTGCCATCACACTACTCCCAAGTTTGTTCCTCAGGGGCGTATTTGTCATCCACGTGTGGGCAAAGAGCTAGAGATTGAGTATCAGATTGTTGAGAAGAACATCCTGCGAACTCAAACACACTTGTTTGATGTGCTGACGCGAGATGAGCCCCTAGCCATTGTTTCACAGAGTCCTAATATGATGGATCTTGTCAAGTGTGATGGAGCGACCCTGTTATATAAAAACAAGGTGTGGAGATTAGGGGTAACGCCAAGTGAATCTCAGATAAGAGAGATAGCTTTGTGGCTCTCTCAGTGCCATAGGGATTCCACAGGTTTTTTTACAGATAGCTTGTCTGATGCAGGCTTCCCTGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGACATCTGCCAGAATAACTTCCAAAGATATAGTTTTCTGGTTTTGGTCTCACACGGCTGCAGAAATCCGATGCGACGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGTTGTCAAGAACAGGAGCTTACTCTGGAAGGTCTATGAAACGGATGCCATTCATTCATTGCATTTAATACTGAGAGATGCGTTCAAAGAGACAGAGAGCATGAAGATAGCCACATATGCTCCCAATTCAAGGCTTGGTTGTTTGAACATTGAAGAAACGCAAGGACTGGAGGCAGTGACAAATGAGATGGTAAGGTTAATTGAAACAGCAACAGTGCCAGTTTTGGCAGTTGATGTTAATGGGATGGTCAATGGATGGAACACCAAAATTGCTGAGTTGACAGGTCTTCCAAGTGATGAAGCTATGGGAAAGCATTTTCTCACACTTGTAGAGGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGCACATGGCATTGCAGGGTGAGGAAGAGGAAGAGAGAAATGTCCAATTTGAGATCAACACATATGATTTCAAGATTGATTCTGGTCCTGCCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATATTGTGGGAGTTTGTTTTGTGGCACAAGGTATAACTGCTCAGAAAACAATGATGGAAAAATTCCCCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATCGATCCCTCCATTATTTAGCACAGATGAATTTGGTTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACCGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGAGAGATTTTCGGGACCCAGATAGCTGGTTGTCGCCTAAGGAATCATGAAGCTGTTGTTAATTTTAGCATTGTACTTAATACAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTATTGGTTTCTTTACTCGCGATGGAAAGCATGTAGAATCTAGTCCAGAGCTGCAACAGGCATTACACATTCAGCTCCTATCTGAGCAAACTGCAATGAAAAGACTGAAAGATTTAAATTATTTGAAAAGGCAAATCCGGAATCCTTTATATGGGATTATGTTCTCCCGGAAATTGTTAGAGGGTACTGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAATGAGCACGCAGTGTCAACACCAGCTTAGCAAAATTCTGGATGACTCAGATCTTGACAGCATCATTGATGGCATTACGCATGATGGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAGGAGGGTATTAGCATGCTGATTAGCAGAAAGCTCATGAAGGGAGACGTACGTTACATAAGGGAAGCAGGGAAAATCATCTTTCATCTTATCTGTTGA
Predicted protein sequences of Glyma.03g227300
>Glyma.03g227300.1.p sequence-type=predicted peptide transcript=Glyma.03g227300.1 locus=Glyma.03g227300 ID=Glyma.03g227300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIILVYVLGMMFLSFPGQLRSSRPSARRISQTSLDAKPHATFEESGSSFDYSNSVKMSPAGTGGGTVSGEHEPKSDRAATTAYLHQMQKGKLIQPFGCLLVLDEKTYKVIAYSENAPEMLTMASHAVPSVDDHPALDIGTYIRTIFTAPSIASIHKVLGFGDLSLHNTILVHCKTFGNPFYAIIHLVTGSTIIDFESVQPPEVPMTASGSLQSYYKLAAKATTRLQSLATVNMETLCNTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEVKRPGLEPYLGLHYPATDIPHATRFSLWRTRCVIQDKKIPFDLALYGSTLRAAHSCHLQFMVNMNSSASLVLAVVINDNDEDGNSSDDAAVQQPHKSSTSLWGLVVCHHTTPKFVPQGRICHPRVGKELEIEYQIVEKNILRTQTHLFDVLTRDEPLAIVSQSPNMMDLVKCDGATLLYKNKVWRLGVTPSESQIREIALWLSQCHRDSTGFFTDSLSDAGFPGAAALGDIACGMTSARITSKDIVFWFWSHTAAEIRCDGAKHEPGERDDVVKNRSLLWKVYETDAIHSLHLILRDAFKETESMKIATYAPNSRLGCLNIEETQGLEAVTNEMVRLIETATVPVLAVDVNGMVNGWNTKIAELTGLPSDEAMGKHFLTLVEDFSVDRVKKMLHMALQGEEEEERNVQFEINTYDFKIDSGPASLVVNACASRDLQDNIVGVCFVAQGITAQKTMMEKFPRIEGDYKAIVQNPNPSIPPLFSTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEIFGTQIAGCRLRNHEAVVNFSIVLNTAMAGLETEKVPIGFFTRDGKHVESSPELQQALHIQLLSEQTAMKRLKDLNYLKRQIRNPLYGIMFSRKLLEGTELGAEQKQFLQMSTQCQHQLSKILDDSDLDSIIDGITHDGFGVPETLLNQMFGRDGHESEEGISMLISRKLMKGDVRYIREAGKIIFHLIC*






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