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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09570.1 | AT | phytochrome A | JGI | N/A | IEA |
| GO:0000160 | GO-bp | phosphorelay signal transduction system | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | EnsemblGenomes | N/A | IEA |
| GO:0006355 | GO-bp | regulation of transcription, DNA-templated | JGI | N/A | IEA |
| GO:0007165 | GO-bp | signal transduction | EnsemblGenomes | N/A | IEA |
| GO:0007165 | GO-bp | signal transduction | JGI | N/A | IEA |
| GO:0009584 | GO-bp | detection of visible light | EnsemblGenomes | N/A | IEA |
| GO:0009584 | GO-bp | detection of visible light | JGI | N/A | IEA |
| GO:0018298 | GO-bp | protein-chromophore linkage | EnsemblGenomes | N/A | IEA |
| GO:0018298 | GO-bp | protein-chromophore linkage | JGI | N/A | IEA |
| GO:0023014 | GO-bp | signal transduction by protein phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | JGI | N/A | IEA |
| GO:0000155 | GO-mf | phosphorelay sensor kinase activity | EnsemblGenomes | N/A | IEA |
| GO:0000155 | GO-mf | phosphorelay sensor kinase activity | JGI | N/A | IEA |
| GO:0004871 | GO-mf | signal transducer activity | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| PF00360 | PFAM | Phytochrome region | JGI | N/A | IEA |
| PF00512 | PFAM | His Kinase A (phospho-acceptor) domain | JGI | N/A | IEA |
| PF00989 | PFAM | PAS fold | JGI | N/A | IEA |
| PF01590 | PFAM | GAF domain | JGI | N/A | IEA |
| PF08446 | PFAM | PAS fold | JGI | N/A | IEA |
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Glyma.03g227300 not represented in the dataset |
Glyma.03g227300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g224200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g38620 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g227300.1 sequence-type=CDS polypeptide=Glyma.03g227300.1.p locus=Glyma.03g227300 ID=Glyma.03g227300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATAATTCTTGTTTACGTACTCGGCATGATGTTTCTGTCGTTTCCTGGTCAATTAAGATCATCAAGACCCAGTGCTAGGAGGATATCTCAGACAAGTTTAGATGCAAAACCGCATGCAACATTTGAGGAATCAGGTAGTTCTTTTGACTACTCGAATTCAGTGAAAATGTCTCCAGCTGGTACAGGAGGAGGCACTGTCAGTGGAGAGCATGAACCAAAGTCTGATAGAGCAGCAACAACTGCTTACCTCCATCAGATGCAGAAAGGCAAGCTTATTCAGCCATTTGGGTGCTTGTTGGTCTTAGATGAGAAAACATATAAGGTCATCGCTTACAGTGAGAATGCACCTGAAATGCTCACCATGGCTAGTCATGCTGTCCCCAGTGTTGATGACCACCCTGCTCTTGACATTGGCACTTACATAAGGACTATTTTCACTGCCCCAAGTATTGCTTCTATTCACAAGGTACTTGGATTTGGGGATCTTTCACTTCATAACACCATTCTAGTCCATTGCAAGACCTTTGGGAATCCCTTTTACGCAATTATCCATCTTGTTACCGGTAGCACAATCATCGATTTTGAGTCGGTCCAGCCTCCTGAAGTTCCCATGACTGCATCCGGTTCCCTGCAATCCTACTACAAGCTTGCAGCAAAAGCAACAACTAGATTGCAATCCTTGGCTACTGTGAACATGGAAACACTATGTAACACAATGGTTCAAGAGGTTTTTGAGCTCACAGGTTATGACAGAGTGATGGCTTATAAATTCCATGACGATGATCATGGGGAAGTGATTGCTGAGGTGAAAAGGCCAGGCCTAGAGCCATATCTGGGGTTGCACTACCCAGCCACTGATATTCCCCATGCGACGCGCTTTTCTTTATGGAGAACAAGGTGCGTGATTCAAGACAAAAAAATTCCATTTGATTTAGCTTTGTATGGATCAACCTTGAGGGCTGCTCATAGTTGCCACTTGCAATTCATGGTGAACATGAATTCTAGTGCTTCCTTGGTATTGGCAGTTGTGATCAATGACAATGATGAAGATGGGAATAGTTCTGATGATGCTGCTGTTCAGCAGCCACACAAGAGTAGTACGAGTCTATGGGGTTTAGTAGTTTGCCATCACACTACTCCCAAGTTTGTTCCTCAGGGGCGTATTTGTCATCCACGTGTGGGCAAAGAGCTAGAGATTGAGTATCAGATTGTTGAGAAGAACATCCTGCGAACTCAAACACACTTGTTTGATGTGCTGACGCGAGATGAGCCCCTAGCCATTGTTTCACAGAGTCCTAATATGATGGATCTTGTCAAGTGTGATGGAGCGACCCTGTTATATAAAAACAAGGTGTGGAGATTAGGGGTAACGCCAAGTGAATCTCAGATAAGAGAGATAGCTTTGTGGCTCTCTCAGTGCCATAGGGATTCCACAGGTTTTTTTACAGATAGCTTGTCTGATGCAGGCTTCCCTGGGGCTGCTGCTCTTGGTGATATTGCATGTGGAATGACATCTGCCAGAATAACTTCCAAAGATATAGTTTTCTGGTTTTGGTCTCACACGGCTGCAGAAATCCGATGCGACGGTGCAAAGCATGAACCTGGTGAAAGGGATGATGTTGTCAAGAACAGGAGCTTACTCTGGAAGGTCTATGAAACGGATGCCATTCATTCATTGCATTTAATACTGAGAGATGCGTTCAAAGAGACAGAGAGCATGAAGATAGCCACATATGCTCCCAATTCAAGGCTTGGTTGTTTGAACATTGAAGAAACGCAAGGACTGGAGGCAGTGACAAATGAGATGGTAAGGTTAATTGAAACAGCAACAGTGCCAGTTTTGGCAGTTGATGTTAATGGGATGGTCAATGGATGGAACACCAAAATTGCTGAGTTGACAGGTCTTCCAAGTGATGAAGCTATGGGAAAGCATTTTCTCACACTTGTAGAGGATTTTTCAGTAGATAGAGTCAAGAAGATGTTGCACATGGCATTGCAGGGTGAGGAAGAGGAAGAGAGAAATGTCCAATTTGAGATCAACACATATGATTTCAAGATTGATTCTGGTCCTGCCAGCTTGGTAGTTAATGCTTGTGCAAGCAGGGATCTTCAAGATAATATTGTGGGAGTTTGTTTTGTGGCACAAGGTATAACTGCTCAGAAAACAATGATGGAAAAATTCCCCCGAATTGAAGGTGACTACAAGGCAATTGTACAGAACCCAAACCCATCGATCCCTCCATTATTTAGCACAGATGAATTTGGTTGGTGTTGTGAATGGAATTCAGCTATGGCAAAATTAACCGGATGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTAGGAGAGATTTTCGGGACCCAGATAGCTGGTTGTCGCCTAAGGAATCATGAAGCTGTTGTTAATTTTAGCATTGTACTTAATACAGCCATGGCTGGTTTGGAAACAGAGAAGGTTCCTATTGGTTTCTTTACTCGCGATGGAAAGCATGTAGAATCTAGTCCAGAGCTGCAACAGGCATTACACATTCAGCTCCTATCTGAGCAAACTGCAATGAAAAGACTGAAAGATTTAAATTATTTGAAAAGGCAAATCCGGAATCCTTTATATGGGATTATGTTCTCCCGGAAATTGTTAGAGGGTACTGAGTTGGGAGCTGAACAAAAACAATTTCTGCAAATGAGCACGCAGTGTCAACACCAGCTTAGCAAAATTCTGGATGACTCAGATCTTGACAGCATCATTGATGGCATTACGCATGATGGTTTTGGGGTTCCAGAAACATTGCTGAACCAGATGTTTGGACGTGATGGACATGAATCTGAGGAGGGTATTAGCATGCTGATTAGCAGAAAGCTCATGAAGGGAGACGTACGTTACATAAGGGAAGCAGGGAAAATCATCTTTCATCTTATCTGTTGA
>Glyma.03g227300.1.p sequence-type=predicted peptide transcript=Glyma.03g227300.1 locus=Glyma.03g227300 ID=Glyma.03g227300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIILVYVLGMMFLSFPGQLRSSRPSARRISQTSLDAKPHATFEESGSSFDYSNSVKMSPAGTGGGTVSGEHEPKSDRAATTAYLHQMQKGKLIQPFGCLLVLDEKTYKVIAYSENAPEMLTMASHAVPSVDDHPALDIGTYIRTIFTAPSIASIHKVLGFGDLSLHNTILVHCKTFGNPFYAIIHLVTGSTIIDFESVQPPEVPMTASGSLQSYYKLAAKATTRLQSLATVNMETLCNTMVQEVFELTGYDRVMAYKFHDDDHGEVIAEVKRPGLEPYLGLHYPATDIPHATRFSLWRTRCVIQDKKIPFDLALYGSTLRAAHSCHLQFMVNMNSSASLVLAVVINDNDEDGNSSDDAAVQQPHKSSTSLWGLVVCHHTTPKFVPQGRICHPRVGKELEIEYQIVEKNILRTQTHLFDVLTRDEPLAIVSQSPNMMDLVKCDGATLLYKNKVWRLGVTPSESQIREIALWLSQCHRDSTGFFTDSLSDAGFPGAAALGDIACGMTSARITSKDIVFWFWSHTAAEIRCDGAKHEPGERDDVVKNRSLLWKVYETDAIHSLHLILRDAFKETESMKIATYAPNSRLGCLNIEETQGLEAVTNEMVRLIETATVPVLAVDVNGMVNGWNTKIAELTGLPSDEAMGKHFLTLVEDFSVDRVKKMLHMALQGEEEEERNVQFEINTYDFKIDSGPASLVVNACASRDLQDNIVGVCFVAQGITAQKTMMEKFPRIEGDYKAIVQNPNPSIPPLFSTDEFGWCCEWNSAMAKLTGWKREEVMDKMLLGEIFGTQIAGCRLRNHEAVVNFSIVLNTAMAGLETEKVPIGFFTRDGKHVESSPELQQALHIQLLSEQTAMKRLKDLNYLKRQIRNPLYGIMFSRKLLEGTELGAEQKQFLQMSTQCQHQLSKILDDSDLDSIIDGITHDGFGVPETLLNQMFGRDGHESEEGISMLISRKLMKGDVRYIREAGKIIFHLIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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