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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G11160.1 | AT | Translation initiation factor 2, small GTP-binding protein | JGI | N/A | IEA |
| GO:0006413 | GO-bp | translational initiation | EnsemblGenomes | N/A | IEA |
| GO:0006576 | GO-bp | cellular biogenic amine metabolic process | JGI | N/A | IEA |
| GO:0007264 | GO-bp | small GTPase mediated signal transduction | JGI | N/A | IEA |
| GO:0015684 | GO-bp | ferrous iron transport | JGI | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | EnsemblGenomes | N/A | IEA |
| GO:0005622 | GO-cc | intracellular | JGI | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0003743 | GO-mf | translation initiation factor activity | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | EnsemblGenomes | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | JGI | N/A | IEA |
| GO:0015093 | GO-mf | ferrous iron transmembrane transporter activity | JGI | N/A | IEA |
| KOG1145 | KOG | Mitochondrial translation initiation factor 2 (IF-2; GTPase) | JGI | N/A | IEA |
| PTHR23115 | Panther | TRANSLATION FACTOR | JGI | N/A | IEA |
| PTHR23115:SF41 | Panther | PROTEIN F46B6.6, ISOFORM A | JGI | N/A | IEA |
| PF00009 | PFAM | Elongation factor Tu GTP binding domain | JGI | N/A | IEA |
| PF11987 | PFAM | Translation-initiation factor 2 | JGI | N/A | IEA |
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Glyma.03g227100 not represented in the dataset |
Glyma.03g227100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.19g224000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma03g38600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.03g227100.1 sequence-type=CDS polypeptide=Glyma.03g227100.1.p locus=Glyma.03g227100 ID=Glyma.03g227100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGTGGCGCGAGCTTGGAAAGAAGAGAATATATATGAATTTTACTAGAGCTTTGTCGACAACACCATTTAGACATGTGGCAGGATCAAATTTTGCATCCATCTTTACTGTGCAATCTGTTTGTGCATCAGCAAGATGTGTGCCGGATTTCATCAACCTATCATCTCTGGGAGTGGCTGGTTTTGGCAGGGAGACTAAAGAATGTGGAATACGGTGCTTCCATGCTAGTTCACAAGTCTGGGCGAGAAGTGATGGACCATTAGGTTTGCAGACCGCAAAGAGGATATATGTGAAAAGAGGTGGTAGAAACCAGCTACCTGCTGGAGCTCCTTATGCCCGTCGTAATGTCCCAGCTACCAAATGTAATCCTGATAAAACAATAGAAATATTTGAAGGCATGACCCTTGTTGAACTGGCAAAGCGCACTGGAAGATCAGTATCTTCTTTGCAGGATATCCTCACTAATGTTGGCGAAAAGGTTCAATCAGAGTTTGAGCTTCTCAGCATGGATATCGCTGAACTTGTGACAATGGAGGCTGGCATCAATGTTAAGAGGCTACATTCAGCTGAAGGTGCAGAAATTTTACCACGTCCTGCAGTTGTAACAGTGATGGGCCATGTTGATCATGGCAAAACTTCTCTTCTTGATGCCTTGCGTCAAACTTCAGTGGCAGCCAAGGAGGCTGGTGGCATAACTCAACATATAGGTGCTTTTGTGGTGGTCATGCCGTCAGGAGCATCAATCACATTTCTTGATACTCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTTACAGATATAGTGGTGCTGGTTGTTGCTGCAGATGATGGTGTGATGCCTCAAACACTTGAAGCCATGTCCCATGCAAAAGCAGCTAATGTACCAATTGTAGTTGCAATTAACAAATGTGATAAACCAGGTGCAAATTCTGAAAAAGTTAAAATGCAGCTTGCTTCAGAGGGCTTGCTTCTGGAGGAGATGGGTGGGGATGTTCAGGTTGTCGAGGTTTCAGCAACTGAAAAAATTGGACTGGATAACCTAGAAGAAGCTTTACTACTTCAGGCTGATATGATGGATCTTAAAGCACGAATTGATGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTCGACAAAGGACGGGGTCCATTGGTAACTACTATAGTGAAGGCAGGGACTCTAGTTTGTGGTCAGCATGTGGTTGTAGGCTCACAATGGGGAAGAATAAGGGCTATTAAAGATATGGCAGGGAAGTTAACTCGACGAGCAACACCTGCTATGCCTGTTGAGATTGAAGGGCTTCGAGGGCTGCCAATGGCTGGTGATGATGTTATTGTTGTTCATTCTGAGGAGCGAGCTAGAATGCTTAGTTCTGGTAGGCAAAGGAAATATGAGGAGAACAGGCTTAGGAATAAGATGATACAGGACAAGCCAACTACTTCAGATGATTCCAAGGAGGTTCCGCAGTGGGTTGAAATGCCAGTAATAGTAAAAGCAGATGTTCAGGGAACTGTTCAAGCCGTCACTGATGCATTGAAAACTTTAAATAGTGCTCAGGTTTTCGTAAATGTTGTCCATGTTGGCGCTGGGCCTATTTCTCAATCTGATCTAGACTTAGCACAAGCTTGTGGTGCTTGCATAGTTGGATTCAATGTAAAAAGTCCACCTACTGCTCTTAGTCAGGAAGCAGCTCGTGCCGGTATCAAGATAGTTCTGCACCGTGTAATTTACCACCTCTTGGAAGACATAGGCAATTTGATAATAGAGAGGGCCCCTGGGACTTCTGAAACCCATGTTGCTGGGCAAGCAGAAGTGCTGAATATCTTTGAAATCAAAGGGAGCAAGTCCAAGGGGCCTGATGTTAAGATAGCGGGTTGTCGTGTTATCGATGGTTCTGTGACAAGATCAGCAACCCTGAGGCTTCTTAGGAGTGGGGAAGTTGTGTTTGAAGGACTTTGTACATCGCTTAAGCGGGAGAAACAGGATGTGGATTCTGTGAAAAAGGGAACTGAGTGTGGAGTAGTAATCAATAATTGGTGTGATTTCCAGATTGGAGACGTTATTCAGTGCTTGGAACAGGTCATAAGGAAGCCCAAGTTCATTAAGTCAGAGAGTGGTGCTGTTCGAATCGAGTGCTGA
>Glyma.03g227100.1.p sequence-type=predicted peptide transcript=Glyma.03g227100.1 locus=Glyma.03g227100 ID=Glyma.03g227100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAWRELGKKRIYMNFTRALSTTPFRHVAGSNFASIFTVQSVCASARCVPDFINLSSLGVAGFGRETKECGIRCFHASSQVWARSDGPLGLQTAKRIYVKRGGRNQLPAGAPYARRNVPATKCNPDKTIEIFEGMTLVELAKRTGRSVSSLQDILTNVGEKVQSEFELLSMDIAELVTMEAGINVKRLHSAEGAEILPRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHIGAFVVVMPSGASITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAMSHAKAANVPIVVAINKCDKPGANSEKVKMQLASEGLLLEEMGGDVQVVEVSATEKIGLDNLEEALLLQADMMDLKARIDGPAQAYVVEARLDKGRGPLVTTIVKAGTLVCGQHVVVGSQWGRIRAIKDMAGKLTRRATPAMPVEIEGLRGLPMAGDDVIVVHSEERARMLSSGRQRKYEENRLRNKMIQDKPTTSDDSKEVPQWVEMPVIVKADVQGTVQAVTDALKTLNSAQVFVNVVHVGAGPISQSDLDLAQACGACIVGFNVKSPPTALSQEAARAGIKIVLHRVIYHLLEDIGNLIIERAPGTSETHVAGQAEVLNIFEIKGSKSKGPDVKIAGCRVIDGSVTRSATLRLLRSGEVVFEGLCTSLKREKQDVDSVKKGTECGVVINNWCDFQIGDVIQCLEQVIRKPKFIKSESGAVRIEC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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