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Report for Sequence Feature Glyma.03g224800

Feature Type:gene_model
Chromosome:Gm03
Start:42715025
stop:42716552
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g224800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46990.1AT indole-3-acetic acid inducible 20 JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0009734GO-bp auxin-activated signaling pathway EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
PF02309PFAM AUX/IAA family JGI N/AIEA

Proteins Associated with Glyma.03g224800
LocusGene SymbolProtein Name
IAA13 Indole-3-Acetic Acid Responsive Gene 13

Expression Patterns of Glyma.03g224800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g224800
ParalogEvidenceComments
Glyma.19g221900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g224800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g38370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g224800
>Glyma.03g224800.1 sequence-type=CDS polypeptide=Glyma.03g224800.1.p locus=Glyma.03g224800 ID=Glyma.03g224800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAAACCCGCTAGTTCTTCCTCTTCCTCTATTAGCAGCACTACCAACCGCCGCCTCCTCATTTCAACCGCATCTTCTCTCACTCAACAACTTCCTACTGATCTCAGGCTTGGACTCGGCATTTCTGCCACTCAACATGTTGCTTCTTCTATTTCAAGGGGCCAATGGCAACAACCACACCATCCTTTTGTGAACAATAATTATTCACAAGCTGCTGCTTCTGCTGAAGTGAATGATTGCAGCAACGATCATAGCAGCTTCTTTGTGAAGGTGTACATGGAAGGGATTCCAATCGGAAGAAAGCTCAATATACTAGCTCATGGAGGCTACTATGAATTAGTCAGGACTCTTGAACACATGTTTGACACTACCATTCTTTGGGGAACAGAGATGAATGGGGTGCAACCAGAGAGATGCCATGTGCTAACTTATGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCGACGGTAAAGAGGTTGAAGATCACAAGGGTAGACACATTCGGGTGTTAG
Predicted protein sequences of Glyma.03g224800
>Glyma.03g224800.1.p sequence-type=predicted peptide transcript=Glyma.03g224800.1 locus=Glyma.03g224800 ID=Glyma.03g224800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGKPASSSSSSISSTTNRRLLISTASSLTQQLPTDLRLGLGISATQHVASSISRGQWQQPHHPFVNNNYSQAAASAEVNDCSNDHSSFFVKVYMEGIPIGRKLNILAHGGYYELVRTLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC*






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