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Report for Sequence Feature Glyma.03g213600

Feature Type:gene_model
Chromosome:Gm03
Start:41873852
stop:41876604
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g213600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G27720.1AT Small nuclear ribonucleoprotein family protein JGI N/AIEA
GO:0000245GO-bp spliceosomal complex assembly EnsemblGenomesN/AIEA
GO:0000387GO-bp spliceosomal snRNP assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0000956GO-bp nuclear-transcribed mRNA catabolic process EnsemblGenomesN/AIEA
GO:0006396GO-bp RNA processing EnsemblGenomesN/AIEA
GO:0033962GO-bp cytoplasmic mRNA processing body assembly EnsemblGenomesN/AIEA
GO:0000932GO-cc P-body EnsemblGenomesN/AIEA
GO:0005688GO-cc U6 snRNP EnsemblGenomesN/AIEA
GO:0097526GO-cc spliceosomal tri-snRNP complex EnsemblGenomesN/AIEA
GO:0017070GO-mf U6 snRNA binding EnsemblGenomesN/AIEA
KOG3293 KOG Small nuclear ribonucleoprotein (snRNP) JGI N/AIEA
PTHR23338Panther SMALL NUCLEAR RIBONUCLEOPROTEIN SM JGI N/AIEA
PF01423PFAM LSM domain JGI N/AIEA

Expression Patterns of Glyma.03g213600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g213600
ParalogEvidenceComments
Glyma.19g210400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g213600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g37170 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g213600
>Glyma.03g213600.2 sequence-type=transcript locus=Glyma.03g213600 ID=Glyma.03g213600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAATGAGCCCGTCCGAAAACCCTTGAACAACATTGTATGAACAGAGAACAGTTGAGTTGAGGCTAATCAATGCTATATAGAGCGCAATCATAGTCCCTCTTTCTTCTCTTCCGCCATCGTTTTCTTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGTGTTGGGCGTGGAAGGGGAAGAGGCAGAGAGGAAGGTCCTGGTGGGCGCCCAACAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTGCTAGGGGAGCTGGAGGAAGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGTTTGAAGAGTTCCTTTCTACGTTTGCTTCATTTTCACCTTGATTGGATGAGCTCCTAGCGAGCAAGAAATATCTTCAATGAACAAGGCGTGGTAGAGGTTGATTCTAACAAGTGACAGGAACTACTTAATGTGTATCGGTAGCAACTTCACTGCCAGTGTTACCTGTGCATCCTTGCCTTGGCTTTTAGCTTCCAGTGTTTTTCTTGTGTTATGAGCACAAAAATGTTAGTGCTATTATATTACTCGAGGAAAGTTTCTCTGCCAGACTGCCCCCGTCTCCCTTTTAATATTCCCAACAGCAAACTTGCCTTTTCCCTTTCTTTCCTTCCAATGAAAAGTAATGATGGCGCAATGCGTGAAATACTTAACTCAACCTTGATATATTTAGAGATGTTAATTTGACAATTGTATATTTGGCACCAAGCATACACCACTATCTGTTATTTTTTCTTTTCTCCCTTTTGGTCAATTGCAATTGGATTTGGAAAAAGAAATTATAGTT

>Glyma.03g213600.3 sequence-type=transcript locus=Glyma.03g213600 ID=Glyma.03g213600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAATGAGCCCGTCCGAAAACCCTTGAACAACATTGTATGAACAGAGAACAGTTGAGTTGAGGCTAATCAATGCTATATAGAGCGCAATCATAGTCCCTCTTTCTTCTCTTCCGCCATCGTTTTCTTTGAAACGCACAGCTTCAATCACCGACCACACCACCCATCAACGACATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGTGTTGGGCGTGGAAGGGGAAGAGGCAGAGAGGAAGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGGGCGTGGTAGAGGTTGATTCTAACAAGTGACAGGAACTACTTAATGTGTATCGGTAGCAACTTCACTGCCAGTGTTACCTGTGCATCCTTGCCTTGGCTTTTAGCTTCCAGTGTTTTTCTTGTGTTATGAGCACAAAAATGTTAGTGCTATTATATTACTCGAGGAAAGTTTCTCTGCCAGACTGCCCCCGTCTCCCTTTTAATATTCCCAACAGCAAACTTGCCTTTTCCCTTTCTTTCCTTCCAATGAAAAGTAATGATGGCGCAATGCGTGAAATACTTAACTCAACCTTGATATATTTAGAGATGTTAATTTGACAATTGTATATTTGGCACCAAGCATACACCACTATCTGTTATTTTTTCTTTTCTCCCTTTTGGTCAATTGCAATTGGATTTGGAAAAAGAAATTATAGTT
Coding sequences of Glyma.03g213600
>Glyma.03g213600.1 sequence-type=CDS polypeptide=Glyma.03g213600.1.p locus=Glyma.03g213600 ID=Glyma.03g213600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGTGTTGGGCGTGGAAGGGGAAGAGGCAGAGAGGAAGGTCCTGGTGGGCGCCCAACAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTGCTAGGGGAGCTGGAGGAAGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGGGCGTGGTAGAGGTTGA

>Glyma.03g213600.2 sequence-type=CDS polypeptide=Glyma.03g213600.2.p locus=Glyma.03g213600 ID=Glyma.03g213600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGTGTTGGGCGTGGAAGGGGAAGAGGCAGAGAGGAAGGTCCTGGTGGGCGCCCAACAAAAGGAATTGGGCGTGGTCTTGATGATGGTGGTGCTAGGGGAGCTGGAGGAAGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGTTTGA

>Glyma.03g213600.3 sequence-type=CDS polypeptide=Glyma.03g213600.3.p locus=Glyma.03g213600 ID=Glyma.03g213600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTCCTCTTTCCCTTCTCAAGACTGCCCAAGGCCACCCTATGTTGGTGGAACTGAAAAATGGGGAGACATATAACGGGCATTTGGTTAATTGCGACACATGGATGAACATCCATCTGCGAGAAGTCATTTGTACATCTAAAGACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAGATCGCAAACCACCTGGTGTTGGGCGTGGAAGGGGAAGAGGCAGAGAGGAAGCCGAGGCAGGGGTGGTCCCAGTGGAAAGCCTGGTGGAAACAGAGGGCGTGGTAGAGGTTGATTCTAACAAGTGA
Predicted protein sequences of Glyma.03g213600
>Glyma.03g213600.1.p sequence-type=predicted peptide transcript=Glyma.03g213600.1 locus=Glyma.03g213600 ID=Glyma.03g213600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGPGGRPTKGIGRGLDDGGARGAGGSRGRGGPSGKPGGNRGRGRG*

>Glyma.03g213600.2.p sequence-type=predicted peptide transcript=Glyma.03g213600.2 locus=Glyma.03g213600 ID=Glyma.03g213600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGPGGRPTKGIGRGLDDGGARGAGGSRGRGGPSGKPGGNRV*

>Glyma.03g213600.3.p sequence-type=predicted peptide transcript=Glyma.03g213600.3 locus=Glyma.03g213600 ID=Glyma.03g213600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEAEAGVVPVESLVETEGVVEVDSNK*






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