SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.03g209400): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.03g209400): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.03g209400

Feature Type:gene_model
Chromosome:Gm03
Start:41624403
stop:41628209
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g209400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62980.1AT F-box/RNI-like superfamily protein JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
KOG1947 KOG Leucine rich repeat proteins, some proteins contain F-box JGI N/AIEA
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI N/AIEA
PTHR23125:SF17Panther GRR1-LIKE PROTEIN 1-RELATED JGI N/AIEA

Proteins Associated with Glyma.03g209400
LocusGene SymbolProtein Name
TIR1D protein TRANSPORT INHIBITOR RESPONSE 1D

Expression Patterns of Glyma.03g209400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g209400 not represented in the dataset
Glyma.03g209400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g209400
ParalogEvidenceComments
Glyma.19g206800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g209400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g36770 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g209400
>Glyma.03g209400.1 sequence-type=CDS polypeptide=Glyma.03g209400.1.p locus=Glyma.03g209400 ID=Glyma.03g209400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAAAATGGCGTACACGTTTTCGTTTCCGGAGGAGGTGCTGGAGCACGTGTTCTCGTTCATATGGAGCGAGAGGGACAGGAACGCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGAGGTGGTGCAGGAGGAAGGTTTTCGTGGGGAACTGCTACGCGGTGAGCCCTTTGATGGTGATCAAGCGCTTCCCGGAGCTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTCGCGGACTTCAATTTGGTCCCCGAGGGTTGGGGAGGTTACGTTTGCCCCTGGATCGCCGCCATGGCCCGGGCCTTCCCCTGCCTCGAAGAGATCAGGCTCAAGAGGATGGTCATCACCGACGAGAGCTTGGAGCTCATCGCTAAGTCCTTCAAGAACTTCAAGGTCTTGGTTCTCACTTCCTGTGAGGGTTTTACTGCCGATGGACTTACCGCCATTGCTTCCAACTGCAGGAATCTAAGGGAATTGGACTTGCAGGAGAGTGAAGTGGAGGACCTTAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTACACTTCATTAGTTTCACTTAACATCTCTTGCTTAAACCATGAGGTGAGTTTATCTGCATTAGAGCGTCTGCTTGGGAGGTGTCGGAACCTGCGGACCCTCCGTCTCAATCGTGCCGTGCCCCTTGATAGACTACCCAACCTACTTCTCCGGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTATTCAACTGAGATGCGACCGGAGGTCTTCTCAAACCTGGAAGCAGCATTTTCTGGTTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTTCCATCCTACCTTCCAGCTGTCTACCCCATCTGCTCCAGGCTAACATCGCTAAACTTGAGTTATGCTATTATTCAAAGCTCTGATCTTATTAAGCTTATCAGTCAATGCCCAAATTTGTTGCGATTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTTATGCCCTTGCTGCATCATGTAAGGATCTAAGGGAGTTAAGGGTGTTTCCGTCTGAGCCGTTTGGTTTAGAACCAAATGTTTCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCGGTTCTATATTTTTGTCGACAAATGTCGAATGCAGCCCTACATACAATTGCACGGAACAGGCCTAATTTGACTCGTTTTAGGCTTTGTATTATTGAGCCTCGAACTCCTGACTATCTAACCCTGGAACCCCTGGATTCTGGTTTTGGAGCTATTGTAGAGCAATGCAAGGATCTTCAACGCCTATCCCTGTCTGGTCTTCTTACTGACCGTGTTTTTGAGTATATTGGGACTTATGCGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCACCATGTGCTGTCAGGGTGTGATAATCTTAGGAAGCTGGAGATAAGGGATTGCCCCTTTGGTGACAAGGCCCTTTTGGCAAATGCTGAAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCGTGTAAGCTACTGGGTCAGAAAATGCCCAGACTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATGATTGTCCTGTTGAGAAGCTTTATATATACAGGACTGTTGCTGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCACTAAGGCTTGAGTGA
Predicted protein sequences of Glyma.03g209400
>Glyma.03g209400.1.p sequence-type=predicted peptide transcript=Glyma.03g209400.1 locus=Glyma.03g209400 ID=Glyma.03g209400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQKMAYTFSFPEEVLEHVFSFIWSERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPLMVIKRFPELRSIALKGKPHFADFNLVPEGWGGYVCPWIAAMARAFPCLEEIRLKRMVITDESLELIAKSFKNFKVLVLTSCEGFTADGLTAIASNCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLNHEVSLSALERLLGRCRNLRTLRLNRAVPLDRLPNLLLRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAIIQSSDLIKLISQCPNLLRLWVLDYIEDAGLYALAASCKDLRELRVFPSEPFGLEPNVSLTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNLTRFRLCIIEPRTPDYLTLEPLDSGFGAIVEQCKDLQRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDDCPVEKLYIYRTVAGPRLDMPGFVWTMEDDSSLRLE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo