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Report for Sequence Feature Glyma.03g203700

Feature Type:gene_model
Chromosome:Gm03
Start:41199812
stop:41206889
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g203700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22030.1AT ubiquitin-specific protease 8 JGI N/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process JGI N/AIEA
GO:0016579GO-bp protein deubiquitination EnsemblGenomesN/AIEA
GO:0004221GO-mf ubiquitin thiolesterase activity JGI N/AIEA
GO:0036459GO-mf thiol-dependent ubiquitinyl hydrolase activity EnsemblGenomesN/AIEA
KOG1870 KOG Ubiquitin C-terminal hydrolase JGI N/AIEA
PTHR24006Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24006:SF197Panther JGI N/AIEA
PF00443PFAM Ubiquitin carboxyl-terminal hydrolase JGI N/AIEA

Expression Patterns of Glyma.03g203700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g203700 not represented in the dataset
Glyma.03g203700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g203700
ParalogEvidenceComments
Glyma.19g201100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g203700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g36201 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g203700
>Glyma.03g203700.1 sequence-type=CDS polypeptide=Glyma.03g203700.1.p locus=Glyma.03g203700 ID=Glyma.03g203700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCCGTTTATCCGAGAGGCTGGTCCGTTTGTTTCCGAAACCGACCCGTTTTCTCGCTCTTGTTTCTCTCTCCACTCTCCATCATCTCTGCAAGTCCCTCGCTCGCTTCCTACTCTCACAAACCCTACCCGCCACCATGGACAATAACAACCTCTTCTCCGATTACTTCTCCGACGACCTCGATTCCTCCCCCTACCGTCCCCACCGCCGCGACCACGACCACGACCACTACCGCGATTTCGCCGCCCTCGAGCGCCTCTACCTCCTCCCCTACACCTGGTGGCTCGAAGAAGCGCAAAAAAATGAAGAAGCTGATCATCGAGGAGAGGCCGTGCTTTATACGGTGTCGTGCAATTCCGATTCCGAAGCCGAGATTTTGCTTCATCTCAGGAAGGAAGAGGACCCACACAACAACAACATTGGGGTTTCTGCGCGTCAGTATGCCTTGGTTCCCGAGGGACTTTGGTTGCGTGCTCTCAAACGGCATAATGATTTTAATAATGCAGTGAAAGATTTTGGAAGCATCCCATATGAAGAGGACTGTTTGCCAGATTTGTTCCCCTTGCAAGTTAAGATATTTGTTTCATGGGAAACCAGTTTACTGGTAGCAAAGATAAGCCAAAAGGAAAATGTGGCTGCCTTCTATGAGAAAGCTTGTGACATTTTCAATTCTGCATATAACCCTGTGCATATTTGGGACTTTTCCGGGCAGACAACCCAGTTCTTCTTGAATGACAAATCTAGGTTGCCAAACGATTCTCCTGGTCAACCTAGAAAAGAGGTTGTTCTGGAGTTACAAGTTCATGGACTTCCAGATTCTATGGGGGGTAATGGGCGCAATGAGATGATTTTAGATAGGTCTCAGATGGAATGTTCACATAGTGGCTCTGTTATAGTGAATGGAAGCACTGACAATGTGATCCCCTGCGTATCAGTGACCAACCATTTTCGAGGCAGTAGCTGTAGAGCAATTCGATCTTTGGGCTTGACAGGACTACAGAATCTTGGAAATACATGTTTTATGAATAGTGCCATTCAGTGTTTGGCTCACACCCCAAAGCTTGTTGATTTTTTCCTTGGAGATTATCGTAAAGAGATAAATTATGAAAATCCGTTGGGAATGAATGGAGAACTTGCTCTAGCTTTTGGAGACTTGCTTAGAAAGCTGTGGGTTCCTGGAGCAGCACCCATTGCACCAAGAACGTTTAAGATGAAACTAGCTAATTTTGCTCCTCAGTTTAGTGGTTATAGCCAGCATGACTCTCAAGAACTTCTTGCTTTTTTGTTGGATGGATTGCATGAAGACCTTAATCGTGTAAAACGCAAACCATATCATGAAGTTAAGGATGCAGATGGTCGTCCAGATGAAGAAGTGGCAGAAGAGTATTGGCGAAATCACCTTGCTCGCAATGACTCCATTGTAGTTGATTTATGCCAAGGTCAGTTTCGGTCGACATTGGTTTGCCCTATTTGCAAGAAGGTTTCGATCACATTTGACCCTTTTATGTATCTATCTCTTCCTTTACCTTCTACTACGATACGGACCATGACTTTGACAGTCATAAGCACTGATGGGAATACATCACCTTCCGCAATTACAGTAACAGTGCTTGAAAGTGGAACACTTAAGGATCTTATTGGGGCCTTAAGTGCTTCTTGTTCTCTGAGAGATGATGAAACCCTCTTGGTGGCTGAGATATACAGGAATAAAATTTTTCGAGTATTTGAGGATCCATCTGATTTGTTAGTTGAAATTAGAGATCAGGACAAACTTGTCGCTTACCGAATGCAGAAGTGTAATGAGCCTAGTCCCTTGGTTGTTTTTCTGCATGAACATTTGGCGGAAAATTTTGGGAAGGAGAGGTTAGAAAACAGGTTGTTTGGTATTCCCCTTGTTACAAGGTGGTCCAGTATTTCCTGTGGATATGATGATGTTGAAAGGGAGTTTCTGAAGTTAATCAATCCATTTCTGATGCGCACTGAAGGTGTATTAGATGAGTATGATAAGAATGATGGTGTTAAAAAAAGAGTAAGTGAACATGATGAATTGGGTGATGCTACTAACTCTGCAGCAATAGTAAATGATGCAGACTCAAACAGTGGAACAGAGGATGACATTCATTCTTCAACTGACTTTGAATTCTACTTGCAAGGATTAGAGAGGGCCAAGATAATAGTGAACAAACCATTACCACAAGTCACAATGTCGTCTGGAAGGCTGCCTGCGGTAGTTGTCTTGTGGTCAGATAAGATGCTTAAAATGTATGATACATACCTGCTTGATTCATTGCCTGAGGTTTTCAAGCCCCAGCTATTTGCCAAGAGAATGCAAGAATCAGTTTCTATTTACAAGTGCCTTGAAGCTTTCTTGAAAGAGGAACCTCTTGGGCCAGAAGACATGTGGTACTGTCCTAACTGCAAAAATCCTCAGCAAGCATCTAAGAAACTAGATCTTTGGAGATTGCCTGAAATTCTTGTTGTTCATTTGAAGAGGTTCTCATTCAGCCGATACTTCAAGAACAAGCTGGAAACATTTGTTGATTTCCCAATTAATGATCTGGACTTGTCAACATATGTAGCCCACGGGAATAACCAGTCTTCCAACCGCTATGTGCTATATGCAATTAGTTGTCATTATGGAGGGTTAGGAGGAGGTCACTATACAGCATTTGTCCGTTATGGCTATGATAAATGGTATGATTTTGATGACAGCAGGGTCGAATCTATTAGTGAGGACATGATAAAGACTCCTGCTGCTTATGTTCTTTTCTACAGGAAAATTTAG
Predicted protein sequences of Glyma.03g203700
>Glyma.03g203700.1.p sequence-type=predicted peptide transcript=Glyma.03g203700.1 locus=Glyma.03g203700 ID=Glyma.03g203700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTRLSERLVRLFPKPTRFLALVSLSTLHHLCKSLARFLLSQTLPATMDNNNLFSDYFSDDLDSSPYRPHRRDHDHDHYRDFAALERLYLLPYTWWLEEAQKNEEADHRGEAVLYTVSCNSDSEAEILLHLRKEEDPHNNNIGVSARQYALVPEGLWLRALKRHNDFNNAVKDFGSIPYEEDCLPDLFPLQVKIFVSWETSLLVAKISQKENVAAFYEKACDIFNSAYNPVHIWDFSGQTTQFFLNDKSRLPNDSPGQPRKEVVLELQVHGLPDSMGGNGRNEMILDRSQMECSHSGSVIVNGSTDNVIPCVSVTNHFRGSSCRAIRSLGLTGLQNLGNTCFMNSAIQCLAHTPKLVDFFLGDYRKEINYENPLGMNGELALAFGDLLRKLWVPGAAPIAPRTFKMKLANFAPQFSGYSQHDSQELLAFLLDGLHEDLNRVKRKPYHEVKDADGRPDEEVAEEYWRNHLARNDSIVVDLCQGQFRSTLVCPICKKVSITFDPFMYLSLPLPSTTIRTMTLTVISTDGNTSPSAITVTVLESGTLKDLIGALSASCSLRDDETLLVAEIYRNKIFRVFEDPSDLLVEIRDQDKLVAYRMQKCNEPSPLVVFLHEHLAENFGKERLENRLFGIPLVTRWSSISCGYDDVEREFLKLINPFLMRTEGVLDEYDKNDGVKKRVSEHDELGDATNSAAIVNDADSNSGTEDDIHSSTDFEFYLQGLERAKIIVNKPLPQVTMSSGRLPAVVVLWSDKMLKMYDTYLLDSLPEVFKPQLFAKRMQESVSIYKCLEAFLKEEPLGPEDMWYCPNCKNPQQASKKLDLWRLPEILVVHLKRFSFSRYFKNKLETFVDFPINDLDLSTYVAHGNNQSSNRYVLYAISCHYGGLGGGHYTAFVRYGYDKWYDFDDSRVESISEDMIKTPAAYVLFYRKI*






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