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Report for Sequence Feature Glyma.03g203000

Feature Type:gene_model
Chromosome:Gm03
Start:41147198
stop:41152087
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g203000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06510.1AT nuclear factor Y, subunit A10 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
KOG1561 KOG CCAAT-binding factor, subunit B (HAP2) JGI N/AIEA
PTHR12632Panther TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED JGI N/AIEA
PTHR12632:SF9Panther JGI N/AIEA
PF02045PFAM CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B JGI N/AIEA

Proteins Associated with Glyma.03g203000
LocusGene SymbolProtein Name
NF-YA03 nuclear transcription factor Y subunit A-3

Expression Patterns of Glyma.03g203000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g203000
ParalogEvidenceComments
Glyma.19g200800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g203000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g36140 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g203000
>Glyma.03g203000.2 sequence-type=transcript locus=Glyma.03g203000 ID=Glyma.03g203000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTTTTCGATTACACTTGTACGCTTTCAtctcccttctttctttccttttacttccactctctctctctctcCTTTGTGTTTTTAATTTGCTTCTTCATATTGTACGTACCGACATGACTCCAACCTGATGGGGTTAAACACTGCTTCTGCGTAGGATTCGATGCCGCTACTCCTTCTTCAGTTTCTACAACTGAGTTTCATATAAAGCTGCTTACTACAAACCAACAAGATTAACTAAGAAATCATCTTTTGGGACGATGCAAACTGTTTATCTTAAAGAGCACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGATTTGCAAAGAATCAAGGGTGGGCTTGCTGTAGCATTGCACCAGGCCCATCCTCGATGAGGCCAGATGAAGAAGCTTCGTTTCAGTTGCGTGTGCTGACTGTGACAAGTTTCGCTCGGTAAGATCGTCCTCACATCTGGTCTAGGCAATCCATCCTTGGCTCATACTTTGGCAATCCATCCTTGGCTCATTGTAACTGAAGGCAACTCATCCTTGGCTTGATGTACTTGCAGTAATTTGTCTTTCTGCACAGGAATGTTGTTGGCATGGTACAAACTAATGACTTGATATCCTGATGCAGAAGACAACTATGTTTCTGTCTTTGTGTGAAAATGAAAGCATGAAACTCTAGTTATGTGTGCTTCGAATAATGTCTAAACGTGGTGTTGTATTTTGTATTTCTGACTTCGAGGAACAATGTATTATAGAACCTTGTTCTGTGGTCTTTGTTAGAAAAAATAAAGCATTGGTGTGTTTTTCTCCTGTT

>Glyma.03g203000.3 sequence-type=transcript locus=Glyma.03g203000 ID=Glyma.03g203000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGTTTTCGATTACACTTGTACGCTTTCAtctcccttctttctttccttttacttccactctctctctctctcCTTTGTGTTTTTAATTTGCTTCTTCATATTGTACGTACCGACATGACTCCAACCTGATGGGGTTAAACACTGCTTCTGCGTAGGATTCGATGCCGCTACTCCTTCTTCAGTTTCTACAACTGAGTTTCATATCTCCTTTCTATTGATGTTTATGCTGAAGACTGAATAAAAGTCTGAGCTGCTTACTACAAACCAACAAGATTAACTAAGAAATCATCTTTTGGGACGATGCAAACTGTTTATCTTAAAGAGCACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGATTTGCAAAGAATCAAGGGTGGGCTTGCTGTAGCATTGCACCAGGCCCATCCTCGATGAGGCCAGATGAAGAAGCTTCGTTTCAGTTGCGTGTGCTGACTGTGACAAGTTTCGCTCGGTAAGATCGTCCTCACATCTGGTCTAGGCAATCCATCCTTGGCTCATACTTTGGCAATCCATCCTTGGCTCATTGTAACTGAAGGCAACTCATCCTTGGCTTGATGTACTTGCAGTAATTTGTCTTTCTGCACAGGAATGTTGTTGGCATGGTACAAACTAATGACTTGATATCCTGATGCAGAAGACAACTATGTTTCTGTCTTTGTGTGAAAATGAAAGCATGAAACTCTAGTTATGTGTGCTTCGAATAATGTCTAAACGTGGTGTTGTATTTTGTATTTCTGACTTCGAGGAACAATGTATTATAGAACCTTGTTCTGTGGTCTTTGTTAGAAAAAATAAAGCATTGGTGTGTTTTTCTCCTGTT
Coding sequences of Glyma.03g203000
>Glyma.03g203000.1 sequence-type=CDS polypeptide=Glyma.03g203000.1.p locus=Glyma.03g203000 ID=Glyma.03g203000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAACTGTTTATCTTAAAGAGCACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA

>Glyma.03g203000.2 sequence-type=CDS polypeptide=Glyma.03g203000.2.p locus=Glyma.03g203000 ID=Glyma.03g203000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAACTGTTTATCTTAAAGAGCACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA

>Glyma.03g203000.3 sequence-type=CDS polypeptide=Glyma.03g203000.3.p locus=Glyma.03g203000 ID=Glyma.03g203000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAACTGTTTATCTTAAAGAGCACGAAGGAAATGCGCACAATTTTGTGGGCACGTTGTCTTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAATCTGTTCATCAGGGAGAGTCTTGTGGCCAAGTGAAACCCTTTTCATTGGAGCTGCCAAACTGCATAGACCAACTTGCTGCCACTAAGCCACTAGCAAGAGGAGCTGACCAAGTGTTGGGTAAAGGGCACATAACTCAGTTTACAATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATGTCACTGCAGTCATCGCTTACTGATCCACAGTCTCGTTTTGAGATAGGGTTTAGTCTGCCCACGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGACTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGAACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTCGCAAGCCCTATATGCACGAATCACGCCATCTCCATGCAATGCGGCGACCAAGAGGATGTGGGGGTCGCTTCTTGAACACTAAGAATTCTGTTGACGGAAATGGTAAAATTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGGCTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGAACTTTTAATTCATCAAAAGAGACTAATGGAAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAGACATGATAGATGGTGGGCGCGGTATGATCATACCCACCAAATGGGTTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTTTGA
Predicted protein sequences of Glyma.03g203000
>Glyma.03g203000.1.p sequence-type=predicted peptide transcript=Glyma.03g203000.1 locus=Glyma.03g203000 ID=Glyma.03g203000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQTVYLKEHEGNAHNFVGTLSSAASAPWWSAFGSQSVHQGESCGQVKPFSLELPNCIDQLAATKPLARGADQVLGKGHITQFTIFPDDCKMSDDAQKLQTTMSLQSSLTDPQSRFEIGFSLPTICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDEPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSVDGNGKIGNEVHKTVGEQLQSSGSQSSEFLQSEVGTFNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSFADMIDGGRGMIIPTKWVAAAGNCCNLKV*

>Glyma.03g203000.2.p sequence-type=predicted peptide transcript=Glyma.03g203000.2 locus=Glyma.03g203000 ID=Glyma.03g203000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQTVYLKEHEGNAHNFVGTLSSAASAPWWSAFGSQSVHQGESCGQVKPFSLELPNCIDQLAATKPLARGADQVLGKGHITQFTIFPDDCKMSDDAQKLQTTMSLQSSLTDPQSRFEIGFSLPTICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDEPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSVDGNGKIGNEVHKTVGEQLQSSGSQSSEFLQSEVGTFNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSFADMIDGGRGMIIPTKWVAAAGNCCNLKV*

>Glyma.03g203000.3.p sequence-type=predicted peptide transcript=Glyma.03g203000.3 locus=Glyma.03g203000 ID=Glyma.03g203000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQTVYLKEHEGNAHNFVGTLSSAASAPWWSAFGSQSVHQGESCGQVKPFSLELPNCIDQLAATKPLARGADQVLGKGHITQFTIFPDDCKMSDDAQKLQTTMSLQSSLTDPQSRFEIGFSLPTICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDEPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTKNSVDGNGKIGNEVHKTVGEQLQSSGSQSSEFLQSEVGTFNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSFADMIDGGRGMIIPTKWVAAAGNCCNLKV*






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