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Report for Sequence Feature Glyma.03g201500

Feature Type:gene_model
Chromosome:Gm03
Start:40986155
stop:40987233
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g201500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35980.1AT Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
PTHR19957Panther SYNTAXIN JGI N/AIEA
PTHR19957:SF11Panther JGI N/AIEA
PF03168PFAM Late embryogenesis abundant protein JGI N/AIEA

Proteins Associated with Glyma.03g201500
LocusGene SymbolProtein Name
LEA2-16 late embryogenesis abundant 2 gene 16

Expression Patterns of Glyma.03g201500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g201500
ParalogEvidenceComments
Glyma.19g198800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g201500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35980 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g201500
>Glyma.03g201500.1 sequence-type=CDS polypeptide=Glyma.03g201500.1.p locus=Glyma.03g201500 ID=Glyma.03g201500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATAAGCAACCCCACTTGAACGGCGCTTATTACGGTCCCGCCATTCCTCCGGCGGAGCAACCACGCTACCGCCCTCACAGTCACCGCGGAAGAAGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGCACTCATTGTCCTCGTTGGCCTCGCGGTCCTCATCTTCTGGCTGGTGGTTCAACCCCGTTCCTTCAAGTTCCACGTCACGGAAGCCGACCTAACACAATTTGATTACTATACCAACAACAACACCCTTCACTACAACATGGTCCTCAACTTCACTGCACGCAACCCCAACAAGAAGCTCAACATATACTACGACAAAGTTGAGGCATTAGCATTCTACGAGGATGTCAGGTTCGCAAGTTACGATGTCATAACACACATGAACTCCTTCCGCCAGTACAAGAAGAGCTCCAGCCCCATGAGCGCCGTTTTCACAGGGCAACAATTGCTGATGCTGAACAATGATCAAGTCTCAGAGTTCAACCAAGACAGGAATACTGGTGTTTATGACATCTATGTGAAGCTCTACTTCAGGATGAGGTTCAGGCTCGGGGACTTTATATCCAATGACTACAAGCCCAAGGTCAAATGTCACCTCAAGGTTCCTTTCAGTAAAAATGGCACCTTTACTCTGTTTCAGACCACCAAATGTGATGTCGATTTCTAG
Predicted protein sequences of Glyma.03g201500
>Glyma.03g201500.1.p sequence-type=predicted peptide transcript=Glyma.03g201500.1 locus=Glyma.03g201500 ID=Glyma.03g201500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADKQPHLNGAYYGPAIPPAEQPRYRPHSHRGRSCCCCLFGILWKILVALIVLVGLAVLIFWLVVQPRSFKFHVTEADLTQFDYYTNNNTLHYNMVLNFTARNPNKKLNIYYDKVEALAFYEDVRFASYDVITHMNSFRQYKKSSSPMSAVFTGQQLLMLNNDQVSEFNQDRNTGVYDIYVKLYFRMRFRLGDFISNDYKPKVKCHLKVPFSKNGTFTLFQTTKCDVDF*






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