Glyma.03g201100

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Report for Sequence Feature Glyma.03g201100

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40972049
stop:	40972976
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g201100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G35980.1	AT	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	JGI	N/A	IEA
GO:0006952	GO-bp	defense response	EnsemblGenomes	N/A	IEA
GO:0007165	GO-bp	signal transduction	EnsemblGenomes	N/A	IEA
GO:0009506	GO-cc	plasmodesma	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0046658	GO-cc	anchored component of plasma membrane	EnsemblGenomes	N/A	IEA
GO:0004871	GO-mf	signal transducer activity	EnsemblGenomes	N/A	IEA
PTHR19957	Panther	SYNTAXIN	JGI	N/A	IEA
PTHR19957:SF11	Panther		JGI	N/A	IEA
PF03168	PFAM	Late embryogenesis abundant protein	JGI	N/A	IEA

Proteins Associated with Glyma.03g201100

Locus	Gene Symbol	Protein Name
	LEA2-13	late embryogenesis abundant 2 gene 13

Expression Patterns of Glyma.03g201100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g201100

Paralog	Evidence	Comments
Glyma.19g198700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g201100 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g35930	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.03g201100

Limit To All Plant Sequences

>Glyma.03g201100.1 sequence-type=CDS polypeptide=Glyma.03g201100.1.p locus=Glyma.03g201100 ID=Glyma.03g201100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCGATAAGCAACCCCACTTGAATGGTGCTTATTACGGTCCCGCCATTCCCCCGGCGGAGCAACCACACTACCGCCCTAGCCGCGAAAGAAGCTGCTGTTGCTGCCTCTTCGGAATCTTGTGGAAGATTCTGGTTGCACTCATTGTCCTCGTTGGCCTCGCGGTCCTCATCTTCTGGCTGGTGGTTCAACCCCGTTCCTTCAAGTTCCACGTCACGAAAGCCAACCTAACACAATTTGATTACTATACCAACAACAACACCCTTCACTACAACATGGTCCTCAACTTCACTGCACGCAACCCCAACAAAAAACTCAGCATATACTACGACAAAGTAGAGGCATTAGCATTCTACGAGGATGTCAGGTTCGCCAATTACAGTGTGATAACGCACATGAACTCCTTCCGCCAGTACAAGAAGACCACCAGCCACATGAGCGCCGTTTTCTCGGGGCAGCAAGTGTTGCCGCTCGACAACGACCTAGTCTCAGAGTTGAACCAAGACAAGAGTGGTGGGGTGTACGAGATCGATGTGAAGCTCTACTTCAGGATTAGGTTCAGGCTCGGGGATGTCAAAACCCGTCGCTTCAAGCCCGAGGTCAAATGTGATATCAGGGTTCCCTTGAGGACCAATGGCAGCGTAACTTTGTTTCAGACCACCAAGTGTGATGTCGATTACTAG

Predicted protein sequences of Glyma.03g201100

Limit To All Plant Sequences

>Glyma.03g201100.1.p sequence-type=predicted peptide transcript=Glyma.03g201100.1 locus=Glyma.03g201100 ID=Glyma.03g201100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADKQPHLNGAYYGPAIPPAEQPHYRPSRERSCCCCLFGILWKILVALIVLVGLAVLIFWLVVQPRSFKFHVTKANLTQFDYYTNNNTLHYNMVLNFTARNPNKKLSIYYDKVEALAFYEDVRFANYSVITHMNSFRQYKKTTSHMSAVFSGQQVLPLDNDLVSELNQDKSGGVYEIDVKLYFRIRFRLGDVKTRRFKPEVKCDIRVPLRTNGSVTLFQTTKCDVDY*

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