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Report for Sequence Feature Glyma.03g199700

Feature Type:gene_model
Chromosome:Gm03
Start:40851137
stop:40855966
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g199700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06260.1AT TLD-domain containing nucleolar protein JGI N/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
KOG2557 KOG Uncharacterized conserved protein, contains TLDc domain JGI N/AIEA
PTHR23354Panther NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED JGI N/AIEA
PTHR23354:SF41Panther JGI N/AIEA
PF07534PFAM TLD JGI N/AIEA

Expression Patterns of Glyma.03g199700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g199700
ParalogEvidenceComments
Glyma.19g197300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g199700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35770 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g199700
>Glyma.03g199700.2 sequence-type=transcript locus=Glyma.03g199700 ID=Glyma.03g199700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACCCACGTATGAGTATATTTCAGAAATCAAGAAACTTGATGATGGGTGTGGGTATAGAAGTAGCATGAAAAGGAAAGACGTGCCACAAAACTATACGGAACCTATAGACTCTGGAGTCTGGACTGAAATCGAAGTCGAAGCAAGCAATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAAAGTATTGCTTGCATGCGTGTGATATAATCCACCCATTGGCGTTTTAATATCATTGTTAATATCATAGTAATCTTTGTTAAATAACATATTGTGAAACCTTTTTTTTTATAATTCTTTTTGGTACCTTGAGAATAATAATTAACATACATTGGGGCTACATTGTACTTGCAATCTTGCATGATGGATACCTGCGAAGATTTTTTCAGTATCCTAACAACATATTATTTAAC

>Glyma.03g199700.3 sequence-type=transcript locus=Glyma.03g199700 ID=Glyma.03g199700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CATGATTAGGAGGATTAACTTTATGTGCCTTCAAAAAATCATGTGGGATGACAAAAATGCTATGGAGCTAGACACTTTAGGATTTCAAATCTGGTGCACAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAAAGTATTGCTTGCATGCGTGTGATATAATCCACCCATTGGCGTTTTAATATCATTGTTAATATCATAGTAATCTTTGTTAAATAACATATTGTGAAACCTTTTTTTTTATAATTCTTTTTGGTACCTTGAGAATAATAATTAACATACATTGGGGCTACATTGTACTTGCAATCTTGCATGATGGATACCTGCGAAGATTTTTTCAGTATCCTAACAACATATTATTTAAC
Coding sequences of Glyma.03g199700
>Glyma.03g199700.1 sequence-type=CDS polypeptide=Glyma.03g199700.1.p locus=Glyma.03g199700 ID=Glyma.03g199700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCAACGCTCAGTCACCTTCCAACAATGATCCTCGATATGTTTCAGCAACCAGAGCTTTTACTCAAAAGGAACTTGAAGACTTGAGGTCTCGGTTCAACAATCTGGCTAATCAATCCCAGAGCAACGGGAAATACATCCCTCCCTCCGTTTTTCAGTCATATTTTGGATTTCATGGCCCTCTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA

>Glyma.03g199700.2 sequence-type=CDS polypeptide=Glyma.03g199700.2.p locus=Glyma.03g199700 ID=Glyma.03g199700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTTGATTTAGTTACTCAGGAGCGCAAGGATCAGAAGCTAACCTTTGAAGACCTCGTGGTTGCTAAAGCTACTTATGAGAAAGGGACAAAAGATGAAATTGAAGAATTCATCTTTCGCTTATTAGATGTATCTGGAGATAATTTTGTAGGGAGGTCTGATTTGGAAACTGTTATGATTGCCATTTTTAATGATATATTACGCATAAAAGGTTCTGATGATAGATCAAGTTCACATGAGGATATTGTCAACATATTTCTGAATGCTGCAAATTTCTCCAAGCAAGATGGAGGGGGCACTGAGGGGACAATGTCTTTTGAAGATTTCAGAAGCTGGTGTACTCATCTCCCCTCTGTGAGGAAGCTTCTTGGAAGCCTGCTTTTGCCACCTGATTCAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA

>Glyma.03g199700.3 sequence-type=CDS polypeptide=Glyma.03g199700.3.p locus=Glyma.03g199700 ID=Glyma.03g199700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTAGGAGGATTAACTTTATGTGCCTTCAAAAAATCATGTGGGATGACAAAAATGCTATGGAGCTAGACACTTTAGGATTTCAAATCTGGTGCACAGGACGACCTGGTTATCAGATTCCTAAACTATTGACTTCGAAGGCTATTGATTCTAACATTATACTTTTGAGAAAGGAATATACTTGGCATATTGGAGGCGCACTCTCTCACCAAGACCTGGAAGATTGGAATCTTTTGTATCATAGTTCTGTTAATGGTCTTAGTTTTAATACATTCCTGGGCAACATTTCAAACCATGCAGGCCCAACTGTGTTAATTATTAAGGATAAAGAAGGTTATATATATGGAGGGTATGCTTCTCAACCATGGGAGCGTCATGCTGATTTTTACGGAGACCTGAAATGTTTCCTTTTTCAACTAAATCCAGTGGCATCTATATTCAGGCCAACTGGAGCAAACAATAACCTACAATGGTGCGCTATCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGAATCACTTGGGTTTGTTCATATCAGCAAACTTTGATCAAGGACATACATTTTCGTGTACCACGTTTGGTAGCCCTTGCCTCTCCAAGACTAACCGTATATTACCAGAAGTAATAGAATGCTGGGGAGTCACTCAAGATGCGACACAAGACAAGAATGATGCTGTCAAGGGCACTATTCTGGAGAGGTTCAAGGAAGATCGCAACATGCTCAAAATGGTAGGCCTAGCAAATTCCAGCGAGTAA
Predicted protein sequences of Glyma.03g199700
>Glyma.03g199700.1.p sequence-type=predicted peptide transcript=Glyma.03g199700.1 locus=Glyma.03g199700 ID=Glyma.03g199700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGNAQSPSNNDPRYVSATRAFTQKELEDLRSRFNNLANQSQSNGKYIPPSVFQSYFGFHGPLGERMFDLVTQERKDQKLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKQDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*

>Glyma.03g199700.2.p sequence-type=predicted peptide transcript=Glyma.03g199700.2 locus=Glyma.03g199700 ID=Glyma.03g199700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFDLVTQERKDQKLTFEDLVVAKATYEKGTKDEIEEFIFRLLDVSGDNFVGRSDLETVMIAIFNDILRIKGSDDRSSSHEDIVNIFLNAANFSKQDGGGTEGTMSFEDFRSWCTHLPSVRKLLGSLLLPPDSGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*

>Glyma.03g199700.3.p sequence-type=predicted peptide transcript=Glyma.03g199700.3 locus=Glyma.03g199700 ID=Glyma.03g199700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIRRINFMCLQKIMWDDKNAMELDTLGFQIWCTGRPGYQIPKLLTSKAIDSNIILLRKEYTWHIGGALSHQDLEDWNLLYHSSVNGLSFNTFLGNISNHAGPTVLIIKDKEGYIYGGYASQPWERHADFYGDLKCFLFQLNPVASIFRPTGANNNLQWCAINFSSEDIPNGIGFGGRVNHLGLFISANFDQGHTFSCTTFGSPCLSKTNRILPEVIECWGVTQDATQDKNDAVKGTILERFKEDRNMLKMVGLANSSE*






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