Glyma.03g197700

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Report for Sequence Feature Glyma.03g197700

Feature Type:	gene_model
Chromosome:	Gm03
Start:	40703753
stop:	40707808
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.03g197700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52570.1	AT	alpha/beta-Hydrolases superfamily protein	JGI	N/A	IEA
GO:0006505	GO-bp	GPI anchor metabolic process	JGI	N/A	IEA
GO:0006886	GO-bp	intracellular protein transport	JGI	N/A	IEA
GO:0016788	GO-mf	hydrolase activity, acting on ester bonds	JGI	N/A	IEA
KOG2382	KOG	Predicted alpha/beta hydrolase	JGI	N/A	IEA
PTHR10992	Panther	ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN	JGI	N/A	IEA
PTHR10992:SF81	Panther		JGI	N/A	IEA
PF00561	PFAM	alpha/beta hydrolase fold	JGI	N/A	IEA
PWY-1121	SoyCyc9	suberin monomers biosynthesis	Plant Metabolic Network		ISS
PWY-321	SoyCyc9	cutin biosynthesis	Plant Metabolic Network		ISS
PWY-6733	SoyCyc9	sporopollenin precursors biosynthesis	Plant Metabolic Network		ISS
GN7V-65754	SoyCyc9-rxn	palmitoyl-CoA hydrolase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.03g197700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.03g197700 not represented in the dataset	Glyma.03g197700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.03g197700

Paralog	Evidence	Comments
Glyma.19g195600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g197700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma03g35550	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.03g197700

Limit To All Plant Sequences

>Glyma.03g197700.2 sequence-type=transcript locus=Glyma.03g197700 ID=Glyma.03g197700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTGGTCTAAGGTATGCCACAGGCAGAAGAACTAAAAGCCCAGTCAAAGTAAAAAGTAAAGCAGAAAATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGCACAAAAGTAACAATCCCCAACGTTACAATTCTACAGTGAAAAGTCCTATTGGAATCTATTGGAGAACCCTCCCAAGGGTATGGAAATAGTAATTGTGCGTGCTGAAAAAAGTGATAGATGGGACGAAGACGCTATTGACAGGATCCAGAAACTAGCCAGTCAGGGAGGATCTGACTCTCCTGGGAAAGCTTCCTTCTTTGTTCTTCCCAATGCTGGTCATTGGGTTCACGTAGATAACCCAAAGGGACTTCTTGAGATCGTGGCTTCCAAGATAGCATCCCTTTAGTTCTGCTTTAGTTGAACTATGGGGCATCCATCGTTGAAAATTGTTGCGTCCAGAGTCGAAATTCTTACATTATTTATGTACAATTTATCAACTACCAAATAATTTATTTTACATACAATTCATTGTAATGCG

Coding sequences of Glyma.03g197700

Limit To All Plant Sequences

>Glyma.03g197700.1 sequence-type=CDS polypeptide=Glyma.03g197700.1.p locus=Glyma.03g197700 ID=Glyma.03g197700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGTGAAAAGTCCTATTGGAATCTATTGGAGAACCCTCCCAAGGGTATGGAAATAGTAATTGTGCGTGCTGAAAAAAGTGATAGATGGGACGAAGACGCTATTGACAGGATCCAGAAACTAGCCAGTCAGGGAGGATCTGACTCTCCTGGGAAAGCTTCCTTCTTTGTTCTTCCCAATGCTGGTCATTGGGTTCACGTAGATAACCCAAAGGGACTTCTTGAGATCGTGGCTTCCAAGATAGCATCCCTTTAG

>Glyma.03g197700.2 sequence-type=CDS polypeptide=Glyma.03g197700.2.p locus=Glyma.03g197700 ID=Glyma.03g197700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGCATCTCTGAGATGCAGAAACAGCTCCTCCCTCCTCCTAACTCGCTTCCTCAACTCAGCGAGTCGAAGGTGGTTGCAAACCGTAGCCTACGAAGAACTGCGAGCTCACCCGGACAAACCCTACACTTCAACGGCGGTTTTCATCCATGGCTTTTTGGGATCCTCCAGAAACTGGAGATCTTTCTCTCGCAACCTCTTGGCTTCTCTCTCCAACTCCTCTCCCTCTTCCAATTGGAGGACGGTGATGTTGGACATGAGGAACCACGGGAAATCGACGGAGAGGGAACTGAATCCGCCTCATAATATGGAAAATGCGGCCAAAGATTTGGTCGATTTGGTGAAGGCTGAAGGCTGGTCTTGGCCTGAGGTTGTCATAGGGCATTCCATGGGTGGAAAGGTGGCTTTGCAGTTTGCTGAGAGTTGTAGCCGTGGTGACTATGGCCATTCTGCTTTGTTGCCTAAACAGCTCTGGGTATTGGACTCTGTCCCTGGAGAAGTGAACCAAGAAAACAGTAATGATGAAGTCCGAAATGTTTTAGCAACCTTGCAAAGTTTACCATCCCAATTCTCATCTCGGAAGTGGCTTGTGGGTCATCTGATGGGACTTGGTTACCCTAAGGCACTGTCAGACTGGATAGGCACCAACCTGAAAAAAGTTGGTGATCATGAGACATGGATATTTGATATTCAAAATGCTAAGGAGATGTTTGATTCTTACTGCACAAAAGTAACAATCCCCAACGTTACAATTCTACAGTGA

Predicted protein sequences of Glyma.03g197700

Limit To All Plant Sequences

>Glyma.03g197700.1.p sequence-type=predicted peptide transcript=Glyma.03g197700.1 locus=Glyma.03g197700 ID=Glyma.03g197700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASLRCRNSSSLLLTRFLNSASRRWLQTVAYEELRAHPDKPYTSTAVFIHGFLGSSRNWRSFSRNLLASLSNSSPSSNWRTVMLDMRNHGKSTERELNPPHNMENAAKDLVDLVKAEGWSWPEVVIGHSMGGKVALQFAESCSRGDYGHSALLPKQLWVLDSVPGEVNQENSNDEVRNVLATLQSLPSQFSSRKWLVGHLMGLGYPKALSDWIGTNLKKVGDHETWIFDIQNAKEMFDSYCEKSYWNLLENPPKGMEIVIVRAEKSDRWDEDAIDRIQKLASQGGSDSPGKASFFVLPNAGHWVHVDNPKGLLEIVASKIASL*

>Glyma.03g197700.2.p sequence-type=predicted peptide transcript=Glyma.03g197700.2 locus=Glyma.03g197700 ID=Glyma.03g197700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAASLRCRNSSSLLLTRFLNSASRRWLQTVAYEELRAHPDKPYTSTAVFIHGFLGSSRNWRSFSRNLLASLSNSSPSSNWRTVMLDMRNHGKSTERELNPPHNMENAAKDLVDLVKAEGWSWPEVVIGHSMGGKVALQFAESCSRGDYGHSALLPKQLWVLDSVPGEVNQENSNDEVRNVLATLQSLPSQFSSRKWLVGHLMGLGYPKALSDWIGTNLKKVGDHETWIFDIQNAKEMFDSYCTKVTIPNVTILQ*

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