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Report for Sequence Feature Glyma.03g197600

Feature Type:gene_model
Chromosome:Gm03
Start:40690880
stop:40692074
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g197600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52590.1AT ubiquitin extension protein 1 JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation JGI N/AIEA
GO:0005840GO-cc ribosome EnsemblGenomesN/AIEA
GO:0005840GO-cc ribosome JGI N/AIEA
GO:0003735GO-mf structural constituent of ribosome EnsemblGenomesN/AIEA
GO:0003735GO-mf structural constituent of ribosome JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0003 KOG Ubiquitin/60s ribosomal protein L40 fusion JGI N/AIEA
PTHR10666Panther UBIQUITIN JGI N/AIEA
PF00240PFAM Ubiquitin family JGI N/AIEA
PF01020PFAM Ribosomal L40e family JGI N/AIEA

Expression Patterns of Glyma.03g197600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.03g197600
ParalogEvidenceComments
Glyma.19g195500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.03g197600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35540 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g197600
>Glyma.03g197600.1 sequence-type=CDS polypeptide=Glyma.03g197600.1.p locus=Glyma.03g197600 ID=Glyma.03g197600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACCATAACCCTCGAGGTCGAAAGCAGCGACACCATTGACAATGTCAAGGCTAAGATTCAAGACAAGGAAGGCATCCCTCCGGATCAGCAGCGTTTGATTTTCGCCGGAAAGCAACTTGAAGATGGAAGGACCTTGGCCGATTACAACATCCAGAAGGAATCAACCCTTCACCTTGTCCTCAGGCTTCGTGGTGGCATCATCGAGCCTTCCCTCATGGCTTTGGCTCGCAAATACAACCAGGACAAGATGATTTGCCGCAAATGCTATGCTCGTCTGCACCCTAGGGCTGTGAACTGCCGTAAGAAGAAGTGCGGTCATAGTAACCAGTTGAGGCCTAAGAAGAAGATCAAGTAA
Predicted protein sequences of Glyma.03g197600
>Glyma.03g197600.1.p sequence-type=predicted peptide transcript=Glyma.03g197600.1 locus=Glyma.03g197600 ID=Glyma.03g197600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK*






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