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Report for Sequence Feature Glyma.03g197000

Feature Type:gene_model
Chromosome:Gm03
Start:40650033
stop:40654094
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g197000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G22400.1AT Rho GTPase activating protein with PAK-box/P21-Rho-binding domain JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0007165GO-bp signal transduction JGI N/AIEA
KOG4270 KOG GTPase-activator protein JGI N/AIEA
PTHR23177Panther MKIAA1688 PROTEIN JGI N/AIEA
PTHR23177:SF2Panther JGI N/AIEA
PF00620PFAM RhoGAP domain JGI N/AIEA
PF00786PFAM P21-Rho-binding domain JGI N/AIEA

Expression Patterns of Glyma.03g197000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g197000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g197000
>Glyma.03g197000.1 sequence-type=CDS polypeptide=Glyma.03g197000.1.p locus=Glyma.03g197000 ID=Glyma.03g197000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGGAAGTGCTTCAGTTGCCTTCATCCTCAAGCTGTTCGCGTCGGCCATGTGGTGGTCTCACACCCAATGATGGGTCGCACCCAATTCCCCTTATTAACGCTCCCACTGTGGAAGAACAACAAAGTGTGGAAATTGAAGAAGAAGAAGAGAAAGAAAGGGAAAGGGAGAGGGATCAGCTTTCTATTTTGACCCTTTTGATTGCTACGTTCAGGAAATCTTTGATTGGGTGCAGCACTACTACATCTTCTTCTTCTTCAATGGAGATTGGGTGGCCTTCCAATGTGAGACACGTGGCACATGTCACCTTCGATCGCTTCCATGGCTTTCTCGGTTTGCCTGTGGAGTTCGAACCAGAAGTTCCCAGGAGACCTCCCAGCGCTAGTGCAAATGTTTTTGGAGTTTCAACAGAATCTATGCAGCTGTCTTTTGATGCCAGAGGAAATAGTGTTCCTACAATACTGCTGTTAATGCAAAGACATTTGTATGCACAAGGAGGCCTGCAGGCTGAAGGAATCTTCAGAATTAATGCTGAAAATGGTCAAGAGGAGTTTGTGAGGGAACAATTAAACAGAGGCATAGTACCAGATGGCATTGATGTGCACTGCTTAGCAGGTCTCATAAAGGCTTGGTTTAGAGAACTACCAACTGGGGTATTGGACCCTCTTTCGCCAGAGCAGGTGATGCAATCCCAGTCAGAAGAAGAATGTGCTCAGCTTGTGAGGCTTCTTCCTCCAACAGAAGCTGCTTTGCTAGATTGGGCAATAAACTTAATGGCAGATGTTGCTCAAATGGAAAACTTGAACAAGATGAATGCACGCAATATTGCAATGGTTTTTGCTCCAAACATGACTCAAATGGCAGATCCTTTGACTGCTCTGATGTATGCAGTACAAGTCATGAATTTTCTCAAGACTCTTGTGGTGAAGACACTGAGAGAAAGAGAGGAATCTATTGTAAAATCAAATCCTGTTCCAGACCTTAATTCTTTTGACGATGATGGGAACCATAGCAATCCAGAAATGCTTGACAAGGAGGACAGTGAAAATGGAAATGATTGTAGCGATGACGATGAAGATACAGTGTTTGTCACTGCAGAGCCTTCTCAACAAAGCCCTAGTCATCTCACTGAAGATGGTTGTGAAACTGAAACCGAATCCAAAAGTTTGCCTACATCTACTGAGAATTTTATTTCAAGTGGGAATAGGTTGGTGGTTGACAGTTGTCCATGCACTTTTGTATCTCAAATTTGCTCTTTGGCAATTGGACTTCAAGACTGTGGCCTCGCTACCGGGCAGACAAAAGGGGATCAAGCAAAAATTTGCAGGAGCAAAAGCCTTCAGTTGAGTACTTACGATACAGACAAGTGTTCCAGAAAGGTGATTGAGCTTCCAGTAAGCGGAGCTGCAGAGAAGAACTGTGGAATGGCAATTATTGAGCGCATAAATTCGAGAACAGAGTTGGCTGAAGCCTGGCGTTGA
Predicted protein sequences of Glyma.03g197000
>Glyma.03g197000.1.p sequence-type=predicted peptide transcript=Glyma.03g197000.1 locus=Glyma.03g197000 ID=Glyma.03g197000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEVLQLPSSSSCSRRPCGGLTPNDGSHPIPLINAPTVEEQQSVEIEEEEEKERERERDQLSILTLLIATFRKSLIGCSTTTSSSSSMEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPEVPRRPPSASANVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAENGQEEFVREQLNRGIVPDGIDVHCLAGLIKAWFRELPTGVLDPLSPEQVMQSQSEEECAQLVRLLPPTEAALLDWAINLMADVAQMENLNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLKTLVVKTLREREESIVKSNPVPDLNSFDDDGNHSNPEMLDKEDSENGNDCSDDDEDTVFVTAEPSQQSPSHLTEDGCETETESKSLPTSTENFISSGNRLVVDSCPCTFVSQICSLAIGLQDCGLATGQTKGDQAKICRSKSLQLSTYDTDKCSRKVIELPVSGAAEKNCGMAIIERINSRTELAEAWR*






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