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Report for Sequence Feature Glyma.03g196900

Feature Type:gene_model
Chromosome:Gm03
Start:40641959
stop:40648773
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g196900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03940.1AT chloroplast signal recognition particle 54 kDa subunit JGI N/AIEA
GO:0000103GO-bp sulfate assimilation JGI N/AIEA
GO:0006614GO-bp SRP-dependent cotranslational protein targeting to membrane EnsemblGenomesN/AIEA
GO:0006614GO-bp SRP-dependent cotranslational protein targeting to membrane JGI N/AIEA
GO:0070208GO-bp protein heterotrimerization EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009570GO-cc chloroplast stroma EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0032991GO-cc protein-containing complex EnsemblGenomesN/AIEA
GO:0048500GO-cc signal recognition particle EnsemblGenomesN/AIEA
GO:0048500GO-cc signal recognition particle JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0004020GO-mf adenylylsulfate kinase activity JGI N/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0008312GO-mf 7S RNA binding EnsemblGenomesN/AIEA
GO:0008312GO-mf 7S RNA binding JGI N/AIEA
GO:0016301GO-mf kinase activity JGI N/AIEA
GO:0019904GO-mf protein domain specific binding EnsemblGenomesN/AIEA
KOG0780 KOG Signal recognition particle, subunit Srp54 JGI N/AIEA
PTHR11564Panther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS JGI N/AIEA
PTHR11564:SF7Panther SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN, CHLOROPLASTIC JGI N/AIEA
PF00448PFAM SRP54-type protein, GTPase domain JGI N/AIEA
PF02881PFAM SRP54-type protein, helical bundle domain JGI N/AIEA
PF02978PFAM Signal peptide binding domain JGI N/AIEA

Expression Patterns of Glyma.03g196900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g196900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35470 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.03g196900
>Glyma.03g196900.1 sequence-type=CDS polypeptide=Glyma.03g196900.1.p locus=Glyma.03g196900 ID=Glyma.03g196900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGCCGTAACAGGCTCCCACCATTTTTCCACTCTCTCCCTTTCTTTCTCTCACAACAAAACCTTGCGCTCTTCTTCTGCCAAATCAATCAGGCTTTCCTCTCCTTCGACCAACGCTTCCTTATCTTCCAGAAACTGGTTCGCGAAAGAGGTATGGGGTTGGGTGAACTCCAACTCCAAAGGCGTCGCCGTGAGAAGGTACACACGCGGAGTGGTGGTCAGGGCTGAAATGTTCGGCCAGTTAACAAGTGGCCTTGAGACTGCATGGAACAAACTCAAAGGAGAAGAGGTTTTGTCTAAGGAGAACATTGTGGAACCTATGCGGGATATCAGGAGAGCTCTCTTAGAAGCTGATGTTAGTCTTCCTGTTGTCAGAAGGTTTGTGCAGTCTGTCAGTGACCAGGCTGTGGGTGTTGGTGTCATTCGTGGAGTGAGACCAGATCAGCAATTGGTTAAGATTGTACATGAGGAACTTGTACAATTGATGGGTGGAGAGGTTTCTGAACTGGTTTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTTCAGGGAGTTGGGAAGACAACTGTTTGCGCAAAGTTGGCAAATTATCTCAAGAAACAGGGAAAAAGTTGCATGCTAGTTGCTGGGGATGTTTACAGACCTGCTGCTATTGACCAGCTTGCTATTTTGGGAAAACAGGTGGATGTGCCTGTCTATACAGCAGGTACTGATGTTAAACCTTCAGAAATTGCCAAACAAGGTTTAGAAGAGGCAAAAAAGAAGAAAATTGATGTTGTTATTGTTGATACTGCTGGTAGGCTGCAGATTGACAAGACAATGATGGATGAGTTAAAAGAAGTGAAAAAGGCATTGAATCCAACAGAAGTGTTGCTAGTTGTGGATGCAATGACAGGGCAAGAAGCCGCAGCGTTGGTGACTACTTTCAATCTTGAGATTGGAATAACAGGTGCCATCTTGACAAAGCTTGATGGCGATTCAAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCCGGAAAGCCAATTAAACTTGTAGGACGGGGGGAACGCATGGAGGATCTTGAACCTTTCTACCCTGATCGGATGGCAGGACGCATACTAGGAATGGGAGATGTTCTTTCTTTTGTAGAGAAGGCACAACAAGTTATGCGTCAAGAAGATGCTGAAGAATTGCAAAAGAAGATTATGAGTGCAAAGTTTGACTTCAATGATTTTCTAAAGCAAACCCGTACTGTTGCAAAAATGGGTTCTGTCTCTCGTGTCATTGGAATGATTCCTGGTATGGGGAAGGTTACTCCTGCTCAAATTCGAGATGCAGAGAAGAATTTGCTGAACATGGAAGCAATGATAGAAGCGATGACCCCTGAGGAGAGGGAAAAGCCAGAACTGTTGGCAGAATCCCCTGTCAGGAGGAAAAGGGTTGCTCAGGATTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTTTTCCAAATGCGTGTTCGTATGAAGAACCTGATGGGTGTAATGGAAAGTGGATCACTTCCAACACTTAGTAATCTTGAGGAAGCGCTTAAAGCAGAGGAAAAGGCTCCTCCTGGCACTGCTAGGAGGAGGAAGAGATCGGAATCAAGGAGTGTATTTGGGGACTCAACACCAGCAAGGCCAAGTCCTCGTGGTTTTGGGAGCAAAAATTGA
Predicted protein sequences of Glyma.03g196900
>Glyma.03g196900.1.p sequence-type=predicted peptide transcript=Glyma.03g196900.1 locus=Glyma.03g196900 ID=Glyma.03g196900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAVTGSHHFSTLSLSFSHNKTLRSSSAKSIRLSSPSTNASLSSRNWFAKEVWGWVNSNSKGVAVRRYTRGVVVRAEMFGQLTSGLETAWNKLKGEEVLSKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVRPDQQLVKIVHEELVQLMGGEVSELVFAKSGPTVILLAGLQGVGKTTVCAKLANYLKKQGKSCMLVAGDVYRPAAIDQLAILGKQVDVPVYTAGTDVKPSEIAKQGLEEAKKKKIDVVIVDTAGRLQIDKTMMDELKEVKKALNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQQVMRQEDAEELQKKIMSAKFDFNDFLKQTRTVAKMGSVSRVIGMIPGMGKVTPAQIRDAEKNLLNMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMESGSLPTLSNLEEALKAEEKAPPGTARRRKRSESRSVFGDSTPARPSPRGFGSKN*






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