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Report for Sequence Feature Glyma.03g196800

Feature Type:gene_model
Chromosome:Gm03
Start:40638703
stop:40641247
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.03g196800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G18590.1AT Nucleic acid-binding, OB-fold-like protein JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006310GO-bp DNA recombination EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
PF08661PFAM Replication factor A protein 3 JGI N/AIEA

Expression Patterns of Glyma.03g196800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.03g196800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma03g35460 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.03g196800
>Glyma.03g196800.2 sequence-type=transcript locus=Glyma.03g196800 ID=Glyma.03g196800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCTTAATAATAATAAAAAGTTTATACAAATATGCTTGTGTAAGAAGGCCCATGCCAAAAGCCTCCTGACACTGCCGAGCAACAGTGAATTTGGCCACCATACCATACCATGAGCATAAGGGCGCGCGCGCGCAAAGGATTAGGGTTTCGAACGTAGCGCTTTTGGAGCTTCCATTTCGATTTATACTTGCGCACGATCAGAGTATGGATATATCAAATCCTGCAGCCTTAGTCAATGCGGAACTGTTGCACTTCTATGTTGGAAGAAGGGTAAGGATCGTGGTGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGATGAGAAACAACTAGTTGTAAAAGGATCACCCCCACCTGCTGCTCCTCTTACAACTTTTGTTGAAGTTTATGGTCTTGTTAACAGTGATAAGTCAATTGGTGCTGAGATATGGACCAATTTTGGTGATGCCATCGATATGGATAGCTACAATAAGCTTTGTCAGCTCGCAAATGGAGAATTTAAACACTTGTTCCTGTGAGTTCTAACAAGCTTGTCTGATGATACAGAGGCCTTTCTATCATTTGGAATACTAGAGGAGACATAATCAATGTGTTGGCAACAATGTTTTTCATTTTTTTTTTCCTGATATAATGGTGACAATAGGGTTGATCTTATGTAAAAATGTAAAAACTACCCAAGCCCATCAGCACTAGCCCAATGGACAATGGTCACAGTCCTAGTGGCTTAACTAGCTGCAATTTTTTATAATTTGTTTTGGATTCTCTTGGTAAATATAGTTTTTACTGGTTATAATGGAGATCTTTATCTTTTTGGGTCATGTGAAATGGAGATCGTATTTTGGTTTTTAAAACACTTTCTTTCTCTTCAGTTTTTATGATTAGTATTAGCCCCAAAGTTGACTTCTTTCAGAAGATAGGTTGA
Coding sequences of Glyma.03g196800
>Glyma.03g196800.1 sequence-type=CDS polypeptide=Glyma.03g196800.1.p locus=Glyma.03g196800 ID=Glyma.03g196800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATATATCAAATCCTGCAGCCTTAGTCAATGCGGAACTGTTGCACTTCTATGTTGGAAGAAGGGTAAGGATCGTGGTGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGATGAGAAACAACTAGTTGTAAAAGGATCACCCCCACCTGCTGCTCCTCTTACAACTTTTGTTGAAGTTTATGGTCTTGTTAACAGTGATAAGTCAATTGGTGCTGAGATATGGACCAATTTTGGTGATGCCATCGATATGGATAGCTACAATAAGCTTTGTCAGCTCGCAAATGGAGAATTTAAACACTTGTTCCTGTGA

>Glyma.03g196800.2 sequence-type=CDS polypeptide=Glyma.03g196800.2.p locus=Glyma.03g196800 ID=Glyma.03g196800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATATATCAAATCCTGCAGCCTTAGTCAATGCGGAACTGTTGCACTTCTATGTTGGAAGAAGGGTAAGGATCGTGGTGCAGGTTGTGCGATCTGATGGTGGAGTTGTCATTGGAAAATCAACAGATGAGAAACAACTAGTTGTAAAAGGATCACCCCCACCTGCTGCTCCTCTTACAACTTTTGTTGAAGTTTATGGTCTTGTTAACAGTGATAAGTCAATTGGTGCTGAGATATGGACCAATTTTGGTGATGCCATCGATATGGATAGCTACAATAAGCTTTGTCAGCTCGCAAATGGAGAATTTAAACACTTGTTCCTGTGA
Predicted protein sequences of Glyma.03g196800
>Glyma.03g196800.1.p sequence-type=predicted peptide transcript=Glyma.03g196800.1 locus=Glyma.03g196800 ID=Glyma.03g196800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDISNPAALVNAELLHFYVGRRVRIVVQVVRSDGGVVIGKSTDEKQLVVKGSPPPAAPLTTFVEVYGLVNSDKSIGAEIWTNFGDAIDMDSYNKLCQLANGEFKHLFL*

>Glyma.03g196800.2.p sequence-type=predicted peptide transcript=Glyma.03g196800.2 locus=Glyma.03g196800 ID=Glyma.03g196800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDISNPAALVNAELLHFYVGRRVRIVVQVVRSDGGVVIGKSTDEKQLVVKGSPPPAAPLTTFVEVYGLVNSDKSIGAEIWTNFGDAIDMDSYNKLCQLANGEFKHLFL*






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